PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl003434
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MYB
Protein Properties Length: 394aa    MW: 44540.9 Da    PI: 6.576
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55331884PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-449262PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.75.4e-181461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg W++eEde+l+++v+ +G g+W+ +++  g+ R++k+c++rw +yl
        Pgl003434 14 RGLWSPEEDEKLIKYVTAYGHGCWSVVPKQAGLQRCGKSCRLRWINYL 61
                     788*******************************************97 PP
2Myb_DNA-binding46.21.1e-1467110146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+++ +E+ l++d++k  G++ W+ Ia++++ gRt+ ++k++w++
        Pgl003434  67 RGSFSLQEERLIIDLHKIIGNR-WAQIAKHLP-GRTDXEVKNFWNS 110
                      899*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.5E-27664IPR009057Homeodomain-like
PROSITE profilePS5129424.921965IPR017930Myb domain
SuperFamilySSF466893.63E-2911108IPR009057Homeodomain-like
SMARTSM007171.1E-131363IPR001005SANT/Myb domain
PfamPF002491.0E-151461IPR001005SANT/Myb domain
CDDcd001672.19E-111761No hitNo description
Gene3DG3DSA:1.10.10.606.1E-2465116IPR009057Homeodomain-like
SMARTSM007171.5E-1466114IPR001005SANT/Myb domain
PROSITE profilePS5129419.32266116IPR017930Myb domain
PfamPF002494.8E-1367110IPR001005SANT/Myb domain
CDDcd001672.78E-1069109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MGHHSCCNKQ KVKRGLWSPE EDEKLIKYVT AYGHGCWSVV PKQAGLQRCG KSCRLRWINY  60
LRPDLKRGSF SLQEERLIID LHKIIGNRWA QIAKHLPGRT DXEVKNFWNS CIKKKLMAQG  120
IDLKAHKLLN QAASSKELQE EKSASLINQG YAASETRDGL KRVADIRELV PGKYMGSFLC  180
AGNADISPYY AIHGGTWMER PTYGDYVRPD QEEILYESIS VNDFRHDISQ RLPVLNDYQI  240
SKSQNFENKL LQPETISDPT TFSSQMKGFD QLKHPFLGPN NPIELGHFGM DAISNYQSTN  300
NQLDTFVIPN AACLSHSSDS GFNPSCDTRR MYLPKLCEIE IAEAECTSDQ GEANGFRFSS  360
AYGSYENYGI EFSDSAITIA MDSECINPVT EWNS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-31141167108B-MYB
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.200780.0root| somatic embryo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A222UAQ51e-129A0A222UAQ5_GINBI; R2R3MYB28
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13890.28e-75myb domain protein 26