PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl003511
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MYB
Protein Properties Length: 390aa    MW: 44084.7 Da    PI: 5.9984
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55342410PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-638PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.14.8e-141461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W + Ed+ll ++++ +G g+W++ +++ g+ R++k+c++rw +yl
        Pgl003511 14 RGPWAAREDLLLTKYIEAHGEGQWRALPKKAGLLRCGKSCRLRWMNYL 61
                     89******************************99************97 PP
2Myb_DNA-binding52.41.2e-1667112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+ T +E+el+v+++k+lG++ W++Ia +++ gRt++++k++w+++l
        Pgl003511  67 RGNITLDEEELIVRLHKLLGNR-WSLIAGRLP-GRTDNEIKNFWNTHL 112
                      7899******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.569961IPR017930Myb domain
SuperFamilySSF466893.24E-2711108IPR009057Homeodomain-like
SMARTSM007175.2E-111363IPR001005SANT/Myb domain
PfamPF002492.3E-121461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-211568IPR009057Homeodomain-like
CDDcd001675.08E-81661No hitNo description
PROSITE profilePS5129425.74362116IPR017930Myb domain
SMARTSM007171.2E-1566114IPR001005SANT/Myb domain
PfamPF002492.2E-1467112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.3E-2569116IPR009057Homeodomain-like
CDDcd001673.60E-1171112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MGRAPCCSKV GLHRGPWAAR EDLLLTKYIE AHGEGQWRAL PKKAGLLRCG KSCRLRWMNY  60
LRPDIKRGNI TLDEEELIVR LHKLLGNRWS LIAGRLPGRT DNEIKNFWNT HLSKKLMMKG  120
IDPKTHQLAP ERIHKPRRLT KENEDQETES FEHGMTEKDV ISSSGGKGVQ PIHLPKPNRY  180
IAFPRHLSHE ANVGITNTSV TNSDVQDVLF SPSIDLNSPC KNLHASVDSD HSSSGMLSDI  240
NPIHELGREV SNLPQQGDPE DCFPWACIED WPSEFQPTEP KCISNEVELE LQTSANNHII  300
PPPTKACRNN KPENCTNTLQ KIYEEYLKEL LQDETVPSNA EMVSSTTKNN GDDQEINIFP  360
EGLSSVWECL EGEDELLKDQ RASETLSLHL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-23121165108B-MYB
1h8a_C9e-231211625128MYB TRANSFORMING PROTEIN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A167V9360.0A0A167V936_PICAB; Transcription factor MYB35
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.11e-69myb domain protein 5