PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl003614
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family bHLH
Protein Properties Length: 383aa    MW: 41969 Da    PI: 5.0089
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55340078PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-3483PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH20.11.1e-0660108254
                HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
        HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                +  +  rE+  R++iN+ f+eL + l ++     +K++Ka+iL + ++ +k+L
  Pgl003614  60 KSHKADREKLGREKINEQFAELASALDPD----WPKNDKASILIESMQVVKDL 108
                5556789*******************998....69***********9999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000838.75E-658113No hitNo description
Gene3DG3DSA:4.10.280.101.5E-958130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.87158108IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-459108IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-859122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MPANSNDAHL SFCQPLSENL LADFNVIPEF CPCKSTDQIL DFDAQFCNAN GGANRVFSRK  60
SHKADREKLG REKINEQFAE LASALDPDWP KNDKASILIE SMQVVKDLRV EIKRLQDEHA  120
LLMDESRELT EEKNELKEEK AALKSETDQL QDQFQQHIRI ISSWMMMDPA VIMSAASFPY  180
SLAVPQATPV PSANCQQPVM SNQLQRPLVA PPPYVPLATI GAFPLHPGLH TYAAFGNSHA  240
DGSSPYLQFP NYGPSLNGHC HVERHSSQLH PMPPFLSQMQ CQQGCQAPVS SSGPSVEICK  300
SCASVASTAA VKTQDKSSHV SSQNMDDEGG GKYASSPSPV DDAVVEHRDF CRIEVSCGSE  360
TLPNDMNKEL LSSFSSSISE APH
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024381252.14e-48pollen-specific leucine-rich repeat extensin-like protein 1
RefseqXP_024381254.14e-48pollen-specific leucine-rich repeat extensin-like protein 1
RefseqXP_024381255.14e-48pollen-specific leucine-rich repeat extensin-like protein 1
RefseqXP_024381256.14e-48pollen-specific leucine-rich repeat extensin-like protein 1
RefseqXP_024381257.14e-48pollen-specific leucine-rich repeat extensin-like protein 1
RefseqXP_024381258.14e-48pollen-specific leucine-rich repeat extensin-like protein 1
RefseqXP_024381259.14e-48pollen-specific leucine-rich repeat extensin-like protein 1
RefseqXP_024381260.14e-48pollen-specific leucine-rich repeat extensin-like protein 1
RefseqXP_024381262.14e-48pollen-specific leucine-rich repeat extensin-like protein 1
RefseqXP_024381263.14e-48pollen-specific leucine-rich repeat extensin-like protein 1
RefseqXP_024381264.14e-48pollen-specific leucine-rich repeat extensin-like protein 1
TrEMBLD5ABV20.0D5ABV2_PICSI; Uncharacterized protein
STRINGPP1S136_27V6.12e-46(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19860.16e-26bHLH family protein