PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl003643
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family GATA
Protein Properties Length: 380aa    MW: 41986.7 Da    PI: 6.6245
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55341005PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-10857PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA62.45.5e-20251284134
       GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                C+ C+ttkTplWR+gp+g+k+LCnaCG++yrk +
  Pgl003643 251 CVDCKTTKTPLWRSGPQGPKSLCNACGIRYRKAR 284
                ********************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577163.66E-14244285No hitNo description
SMARTSM004011.6E-19245305IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.954245281IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.104.9E-17249284IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.34E-14250282No hitNo description
PROSITE patternPS003440251276IPR000679Zinc finger, GATA-type
PfamPF003209.9E-18251284IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MAQTGWENRF CREHDDQQVN CLELALRPAM ETYPFGTGVL NFEGSEGYEA TSEVKMIMGS  60
VHDHGCSPRS SAASLSLDNG LVDHKDDNIY VADHVELEGI RLNSESEKAA AGIDHPADQY  120
DQLKYNYASL ASEDEMIDTW SPHEARKDAA LIINRSGAHF QSSDAEIGEP SARLDLVENY  180
LSGGGFPVAQ RESSWIRSAS KSRKTLFNNE ENLQEWPKLG TSFSSSTKDS TTETPLNHGV  240
GGSRNNVPRV CVDCKTTKTP LWRSGPQGPK SLCNACGIRY RKARRALSAF GNSDHIAAEA  300
CNSTSPKRKL VDNREKRAEK FNVHFKKRSR LSIPSLKKFV PSPIHLETNS SHSAFQRVFA  360
QDEEEAAVLL MALSCGLVHV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB8LRB80.0B8LRB8_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49300.11e-20GATA transcription factor 16