PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl003648
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MYB
Protein Properties Length: 380aa    MW: 42482.4 Da    PI: 4.9067
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55334487PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-27095PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.61.7e-141461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT+ Ed +l ++++ +G g W+  +++ g++R++k+c++rw++yl
        Pgl003648 14 RGAWTKKEDMILSEYIRIHGDGGWRNLPKKAGLKRCGKSCRLRWLNYL 61
                     89********************************************97 PP
2Myb_DNA-binding49.21.2e-1572112648
                      HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      ++E+el+++++++lG++ W++Ia +++ gRt++++k++w+++l
        Pgl003648  72 PDEEELIIRLHRLLGNR-WSLIAGRLP-GRTDNEIKNYWNTHL 112
                      89***************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.3E-21563IPR009057Homeodomain-like
PROSITE profilePS5129414.909961IPR017930Myb domain
SuperFamilySSF466896.5E-2712108IPR009057Homeodomain-like
SMARTSM007171.5E-111363IPR001005SANT/Myb domain
PfamPF002493.3E-131461IPR001005SANT/Myb domain
CDDcd001674.39E-91661No hitNo description
PROSITE profilePS5129425.31962116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.4E-2464116IPR009057Homeodomain-like
SMARTSM007173.8E-1466114IPR001005SANT/Myb domain
CDDcd001675.05E-1272112No hitNo description
PfamPF002495.1E-1472112IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MGRSPCCSKE GLNRGAWTKK EDMILSEYIR IHGDGGWRNL PKKAGLKRCG KSCRLRWLNY  60
LRPDIKRGNI CPDEEELIIR LHRLLGNRWS LIAGRLPGRT DNEIKNYWNT HLSKKLSLNE  120
SQHKTSQNFI SSSKSPFPVQ TRVFKATAVK ITTAVRHSDI IRPNGYNGDD CSNCISGKAL  180
KLCNVKEATK SSWRGIPVND SITNEQSERI ASATTDNLIQ TEATNCTSST SNLADQQSPD  240
SDHFAGDAAT LAESLLYLND LSSPDCNLLP SPSDCSTDFA SQELHRGPAS LTEETNGFED  300
MCCDQSNMPC VNSFTVPDDQ EMEEFFNSAQ HENWIPELDC LENSSAQPLS LLLLESEDEW  360
EERSISTLLL EDPLQIPQIP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C8e-241211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.242490.0stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB8LMJ60.0B8LMJ6_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.13e-55myb domain protein 3