PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl003778
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MYB
Protein Properties Length: 373aa    MW: 40585.6 Da    PI: 8.2454
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S38675982PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-24294PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.17.2e-171661147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+W++eEd  l ++v+++G+++W+ I++ ++ gR++k+c++rw + 
        Pgl003778 16 KGPWSPEEDASLQRLVQKYGPRNWTQISKGIQ-GRSGKSCRLRWCNQ 61
                     79******************************.***********985 PP
2Myb_DNA-binding55.71.1e-1770112347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++T+ Ed  +++a++q+G++ W+tIar ++ gRt++ +k++w++ 
        Pgl003778  70 PFTPSEDAAILQAHAQHGNK-WATIARSLP-GRTDNAIKNHWNST 112
                      89******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.481166IPR017930Myb domain
SuperFamilySSF466892.25E-3113109IPR009057Homeodomain-like
SMARTSM007173.6E-151564IPR001005SANT/Myb domain
PfamPF002493.6E-171661IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.5E-241769IPR009057Homeodomain-like
CDDcd001674.01E-141860No hitNo description
SMARTSM007172.1E-1567115IPR001005SANT/Myb domain
PROSITE profilePS5129421.13368117IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.0E-2370116IPR009057Homeodomain-like
CDDcd001679.51E-1370113No hitNo description
PfamPF002497.2E-1570112IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MALSNGRSLE DLDRIKGPWS PEEDASLQRL VQKYGPRNWT QISKGIQGRS GKSCRLRWCN  60
QLSPQVEHRP FTPSEDAAIL QAHAQHGNKW ATIARSLPGR TDNAIKNHWN STLRRRCRDS  120
DKGILVHLDD EISSLDAARK RSSDGFSHDG SSALEDNCCS SWEVDSKRLK RLGELGAEQG  180
PDVEVELEVS DRSDSNPGRV LYRPVPVASF FGSFGKTVAN LQETASGSVG VDPPTSLSLS  240
PPGLDPAIHS PKPPSQKDFH NNSTDNNKIP TPPVVGYMRA DEAVERLSTA VKATVASMLT  300
PVLSSSPRGF NPPAVSSDLL ALMRDMVAKE VHKYMSSHQP PGMYTPLSPH PEFLGAAGLV  360
RNVVLGGALH LNK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-39151163104MYB PROTO-ONCOGENE PROTEIN
1mse_C2e-39151163104C-Myb DNA-Binding Domain
1msf_C2e-39151163104C-Myb DNA-Binding Domain
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.121180.0root| stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024536333.14e-76transcription factor MYB44-like
TrEMBLA5JYF10.0A5JYF1_PICGL; R2R3-MYB transcription factor MYB7
STRINGPP1S10_267V6.12e-73(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67300.16e-59myb domain protein r1
Publications ? help Back to Top
  1. Bedon F,Grima-Pettenati J,Mackay J
    Conifer R2R3-MYB transcription factors: sequence analyses and gene expression in wood-forming tissues of white spruce (Picea glauca).
    BMC Plant Biol., 2007. 7: p. 17
    [PMID:17397551]