PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl003876
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family SBP
Protein Properties Length: 368aa    MW: 39615.9 Da    PI: 7.458
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S40968965PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-9599PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP71.21.9e-221394078
               EEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
        SBP 40 qrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78
               qrfCqqCsrfh lsefDe+krsCrrrLa+hnerrrk+q+
  Pgl003876  1 QRFCQQCSRFHVLSEFDEGKRSCRRRLAGHNERRRKPQP 39
               8***********************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1036129.16E-20142IPR004333Transcription factor, SBP-box
Gene3DG3DSA:4.10.1100.101.6E-10124IPR004333Transcription factor, SBP-box
PfamPF031102.1E-14136IPR004333Transcription factor, SBP-box
PROSITE profilePS5114120.23137IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
QRFCQQCSRF HVLSEFDEGK RSCRRRLAGH NERRRKPQPD SLAINPARFA SAFYDDRRLN  60
SILMDRSPFM HPRITSNSIL EDSIDFKLGG YGKGAWPRVK AEDESSYDGQ VSAGTLSRHN  120
ADRLLFLLQS SKTVPGGAIN QDVHQYMQSS GAHAGQALTL SSSSGENLAG LDVVTATHGL  180
SGVSDSGCAL SLLSFQSGGS RASGSASFDM ATRSGFTMDQ LIQGDQPLMA QPLMHGVQHN  240
FGLFAADKLL TVCSQSSTNL ATGGFPATVV NSMDKQHQGG PLVSNAGGIG NFGGHVFGLL  300
QGSSFRGSQA ASSQDIHGTI DLMRRSSETQ TNDSHDQPGM VHQGSRQFTD AQLLRSFESS  360
IYDTHQLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A3e-151364984squamosa promoter binding protein-like 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.45500.0cone
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K0M7560.0A0A0K0M756_PINTB; SPL1
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.11e-20SBP family protein