PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl003891
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family C3H
Protein Properties Length: 367aa    MW: 39423.6 Da    PI: 8.2037
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55337137PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-42828PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.97.1e-086231027
               GGTS--TTTTT-SS-SSS CS
    zf-CCCH 10 artGtCkyGdrCkFaHgp 27
               ++tG+Ck+G++CkF H++
  Pgl003891  6 MKTGICKFGSKCKFRHPK 23
               89**************96 PP
2zf-CCCH38.12.6e-125480127
               --S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
               +++++C ff +tG+CkyG++CkF H++
  Pgl003891 54 PGEPECAFFVKTGICKYGAKCKFDHPK 80
               5799*********************96 PP
3zf-CCCH35.41.7e-11138163126
                --S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                ++++ C+f+ +tG Ck+G++C+++H+
  Pgl003891 138 PGEPDCPFYVKTGSCKFGSNCRYNHP 163
                5789*********************9 PP
4zf-CCCH37.34.7e-12205230126
                --S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                +++++C f+ +tG+Ck+G++CkF+H+
  Pgl003891 205 PGEPECTFYIKTGECKFGPSCKFHHP 230
                5799*********************9 PP
5zf-CCCH39.59.6e-13251275327
                S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                + +C+f+++tG CkyG +CkF H+p
  Pgl003891 251 ETICPFYLKTGVCKYGVNCKFDHPP 275
                679********************96 PP
6zf-CCCH437.5e-14300325227
                -S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                +++ C+f+++tGtCkyG++CkF H+p
  Pgl003891 300 GEATCPFYMKTGTCKYGATCKFDHPP 325
                5789********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010311.028124IPR000571Zinc finger, CCCH-type
SMARTSM003563.7323IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-5623IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.6625381IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-65380IPR000571Zinc finger, CCCH-type
PfamPF006428.5E-105580IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.84E-65781IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.9E-55979IPR000571Zinc finger, CCCH-type
SMARTSM003567.3E-7137164IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.173137165IPR000571Zinc finger, CCCH-type
PfamPF006423.9E-9139163IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-5142164IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.1E-4143162IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.328204232IPR000571Zinc finger, CCCH-type
SMARTSM003567.9E-6204231IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-8206230IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.66E-6208233IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-4210229IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.685248276IPR000571Zinc finger, CCCH-type
SMARTSM003563.3E-7248275IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-10250275IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-6251275IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.7E-6253273IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.525298326IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-7298325IPR000571Zinc finger, CCCH-type
PfamPF006423.1E-11300325IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.36E-6302325IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.7E-6304323IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
SVLIXMKTGI CKFGSKCKFR HPKDXVGNFK SDENVDGSEV KPATSDVVTL PERPGEPECA  60
FFVKTGICKY GAKCKFDHPK DKGGSLKISE HKGEGDSAIT VGTEGQGVSG VVNGKTENIA  120
AAIKPATMHN TKGLPIRPGE PDCPFYVKTG SCKFGSNCRY NHPDRILVNT PPAIMPFAAQ  180
DQPLVGYSGM LPQHSLGAPI PPQRPGEPEC TFYIKTGECK FGPSCKFHHP LNRPDPSVKL  240
TLAGLPRREG ETICPFYLKT GVCKYGVNCK FDHPPPGELD TARAQPPVKL TLAGFPRREG  300
EATCPFYMKT GTCKYGATCK FDHPPPGEAV AKAVAMAVTT EDNLEDEDKM GSGNVVGAKA  360
TDENLKV
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.138570.0root| somatic embryo| stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004148293.11e-87PREDICTED: zinc finger CCCH domain-containing protein 37 isoform X1
RefseqXP_008447068.11e-87PREDICTED: zinc finger CCCH domain-containing protein 37
RefseqXP_021972715.13e-88zinc finger CCCH domain-containing protein 37-like
SwissprotQ5ZDJ63e-81C3H8_ORYSJ; Zinc finger CCCH domain-containing protein 8
TrEMBLA0A0D6QVA81e-157A0A0D6QVA8_ARACU; Uncharacterized protein
STRINGXP_008447068.15e-87(Cucumis melo)
STRINGXP_004148293.15e-87(Cucumis sativus)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.15e-78floral homeotic protein (HUA1)
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhu RS,Xu ZF,Lin MC
    Ab initio studies of alkyl radical reactions: Combination and disproportionation reactions of CH3 with C2H5, and the decomposition of chemically activated C3H8.
    J Chem Phys, 2004. 120(14): p. 6566-73
    [PMID:15267548]