PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pgl003975

Organism

Picea glauca

Taxonomic ID

3330

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

HB-other

Protein Properties

Length: 362aa MW: 41404.2 Da PI: 8.075

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Pgl#S55344275	PU_unref	Unigene	View CDS
PUT-175a-Picea_glauca-34787	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.2	2.9e-18	9	64	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +kR+ t++q+e+Le+ +++++yp+++++++L+++lgL+e+qV+ WF rR k+kk Pgl003975 9 QKRRLKTPSQVEALENIYAEHKYPTESMKAKLSRELGLSEKQVQRWFRHRRLKDKK 64 589999************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	16.277	5	65	IPR001356	Homeobox domain
SMART	SM00389	1.1E-17	8	69	IPR001356	Homeobox domain
CDD	cd00086	3.14E-17	9	66	No hit	No description
SuperFamily	SSF46689	5.99E-17	9	67	IPR009057	Homeodomain-like
Pfam	PF00046	9.5E-16	9	64	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.4E-18	10	64	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 362 aa Download sequence Send to blast
MEDKGFVEQK RRLKTPSQVE ALENIYAEHK YPTESMKAKL SRELGLSEKQ VQRWFRHRRL 60 KDKKGKKEDP DSNEELDAGS GSNLQQQQHV VRTELGRSEK RRLLGISDYP SAVLAAELTD 120 HDMLKRNHRV MEEDPHHAGN VSTSQDTSSL QSRSSYEMDA LRNGNYVEMK GSNSKKRKGQ 180 VMHMGMEHTY PQHFSVATEE QYIARGLKQA GGSNSKQAKN WNRLTAKDGE NHRFVNNHDY 240 PSAVLAAELT DRELLKGNHD IVEDPYVSLS QERSSLQSGS SYEMEARRLP SKSLNSFEIE 300 ARSKRREKEG LHMVVEPLYW QQAVEHQAIS AVKVQLGRLF QEDGPMLGVE FDPLPPDAFG 360 YR

Sequence ? help Back to Top

Protein Sequence Length: 362 aa Download sequence Send to blast

MEDKGFVEQK RRLKTPSQVE ALENIYAEHK YPTESMKAKL SRELGLSEKQ VQRWFRHRRL  60
KDKKGKKEDP DSNEELDAGS GSNLQQQQHV VRTELGRSEK RRLLGISDYP SAVLAAELTD  120
HDMLKRNHRV MEEDPHHAGN VSTSQDTSSL QSRSSYEMDA LRNGNYVEMK GSNSKKRKGQ  180
VMHMGMEHTY PQHFSVATEE QYIARGLKQA GGSNSKQAKN WNRLTAKDGE NHRFVNNHDY  240
PSAVLAAELT DRELLKGNHD IVEDPYVSLS QERSSLQSGS SYEMEARRLP SKSLNSFEIE  300
ARSKRREKEG LHMVVEPLYW QQAVEHQAIS AVKVQLGRLF QEDGPMLGVE FDPLPPDAFG  360
YR

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pgl.14220	0.0	root\| stem\| vegetative bud

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	D5ABF4	0.0	D5ABF4_PICSI; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G03250.1	5e-21	HB-other family protein