PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl004141
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family C2H2
Protein Properties Length: 354aa    MW: 38204.4 Da    PI: 4.4347
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55332724PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-47470PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.88.1e-05328348121
                EEETTTTEEESSHHHHHHHHH CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHir 21 
                ++C+ C++ F + s L++H  
  Pgl004141 328 HVCNTCSRNFATESALTQHNA 348
                79*****************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.60.120.3406.0E-42095IPR024057Nucleoplasmin core domain
PROSITE profilePS5015710.907328354IPR007087Zinc finger, C2H2
PROSITE patternPS000280330351IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MEFWGVEVKP GEVLCCDPGD DKYLHLSQAA LGEIQNAKEN ERVLLNVHDD NKKIVLGALT  60
YGKCDQFSLD IMFSKPFKLS HSCTTGSVFF IGYTTVVEDV DGGMGGYEDS DSDSDDDRQA  120
QALMRRVKEN GQKEARLAKP ELMKDGVKQL KPESVLIDKA AAKAKPGERK SLPGKKPEEK  180
EESSEDDDEE DDDDDXDVDD DDDEDDEGME GSSDDEDESD EEEGDSDDES DEDKNRKMPK  240
VESSGKKRPL PDSSIKSPGT DKKAKVTPGG AQNQGTDGGK KGGPKISVSK EQIPSNKGQT  300
PKAKGGVGAK ESPKPSTTPG SGKKIGQHVC NTCSRNFATE SALTQHNAAK HGGK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.78550.0needle| stem| vegetative bud
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA9P2L80.0A9P2L8_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44750.21e-21histone deacetylase 3