PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl004159
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MYB
Protein Properties Length: 353aa    MW: 37986.8 Da    PI: 8.5892
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55351013PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-25729PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.11.1e-141863147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+W++eEd  l + v++  +++W++I++ ++ gR++k+c++rw + 
        Pgl004159 18 KGPWSPEEDAALQHFVQKCWPRNWSLISKAIP-GRSGKSCRLRWCNQ 63
                     79******************************.***********985 PP
2Myb_DNA-binding57.82.5e-1872114347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++T+eEd  +++a++q+G++ W+tIar++  gRt++ +k++w++ 
        Pgl004159  72 PFTPEEDATIIRAHAQHGNK-WATIARMLS-GRTDNAIKNHWNST 114
                      89******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.6491364IPR017930Myb domain
SuperFamilySSF466891.01E-3015111IPR009057Homeodomain-like
SMARTSM007171.0E-121766IPR001005SANT/Myb domain
PfamPF002492.0E-141863IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.7E-231971IPR009057Homeodomain-like
CDDcd001672.89E-122062No hitNo description
PROSITE profilePS5129424.00565119IPR017930Myb domain
SMARTSM007171.3E-1569117IPR001005SANT/Myb domain
CDDcd001678.48E-1372115No hitNo description
Gene3DG3DSA:1.10.10.601.0E-2372118IPR009057Homeodomain-like
PfamPF002491.9E-1572114IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MASMKGKSSG HDEPDRIKGP WSPEEDAALQ HFVQKCWPRN WSLISKAIPG RSGKSCRLRW  60
CNQLSPQVEH RPFTPEEDAT IIRAHAQHGN KWATIARMLS GRTDNAIKNH WNSTLRRRCQ  120
GGGALVIDDE ITSGADGFRK RSLSEDADAS RKLKKLSLGT TATTTTTEPC SSSASDRSDS  180
SLALGSPPVY RPVPRAAPLS LTNEANLNPS HHEASCSSTD PPTSLCLSLP GTDAPARPTV  240
ALSALPLPGS SSPLAPPGYI KAEEAMEWMN SAINTTLTQV LSPFVAPARS HGIMPETLGS  300
SGLLAVMQEM VAKEVRDYMS SMQHRNNNNT EFRGCVASPP PMGMRVSNSN ALG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A6e-36171183104MYB PROTO-ONCOGENE PROTEIN
1h88_C9e-361411954159MYB PROTO-ONCOGENE PROTEIN
1h89_C9e-361411954159MYB PROTO-ONCOGENE PROTEIN
1mse_C5e-36171183104C-Myb DNA-Binding Domain
1msf_C5e-36171183104C-Myb DNA-Binding Domain
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.95880.0root| somatic embryo| stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA5JYF00.0A5JYF0_PICGL; R2R3-MYB transcription factor MYB6
STRINGVIT_18s0001g09850.t014e-84(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50060.13e-63myb domain protein 77
Publications ? help Back to Top
  1. Bedon F,Grima-Pettenati J,Mackay J
    Conifer R2R3-MYB transcription factors: sequence analyses and gene expression in wood-forming tissues of white spruce (Picea glauca).
    BMC Plant Biol., 2007. 7: p. 17
    [PMID:17397551]