PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pgl004210

Organism

Picea glauca

Taxonomic ID

3330

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

bHLH

Protein Properties

Length: 350aa MW: 38431.5 Da PI: 5.1703

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Pgl#S55336477	PU_unref	Unigene	View CDS
PUT-175a-Picea_glauca-22698	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	13.2	0.00016	290	332	8	55
HHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 8 rErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 r + R +++++a++ Lr+++P+ ++ a++Le A +++ksLq Pgl004210 290 RRKLRKEKVKKAINLLRSIVPEgH------SMDTAAVLEVASQHLKSLQ 332 5688999*************55......79**************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	10.652	282	331	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.09E-7	288	340	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.62E-4	288	336	No hit	No description
Gene3D	G3DSA:4.10.280.10	6.6E-6	292	343	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 350 aa Download sequence Send to blast
XLEVQYSEAF SKRFIIFDQT GSGVRVIVHP SLVYEFPNLL PDSAKGLDKI NVIIGYLQKE 60 SISQIPSVYN STDRGTGLLA YRERGTGLLA YREHMAPAFT ALQGIRKRRW LSAEAAGNGF 120 VACSKQEETG SQMSCNGSSR GGYQSQSHED TRDLEALLGS DEEEDDSTGH TPSEAITNDQ 180 QSGTQDEAHI SNGIPTKKRR CECMEFGEQE VDFIPSAIQE TAVLNGKCIS DGVCFPPVAS 240 QESGIQLECC NTVKDSDYRD EQFCDYSTDN MTGNGSSNNS ASKVGQPSSR RKLRKEKVKK 300 AINLLRSIVP EGHSMDTAAV LEVASQHLKS LQLKLERLEA NQNDKTLSKP

Sequence ? help Back to Top

Protein Sequence Length: 350 aa Download sequence Send to blast

XLEVQYSEAF SKRFIIFDQT GSGVRVIVHP SLVYEFPNLL PDSAKGLDKI NVIIGYLQKE  60
SISQIPSVYN STDRGTGLLA YRERGTGLLA YREHMAPAFT ALQGIRKRRW LSAEAAGNGF  120
VACSKQEETG SQMSCNGSSR GGYQSQSHED TRDLEALLGS DEEEDDSTGH TPSEAITNDQ  180
QSGTQDEAHI SNGIPTKKRR CECMEFGEQE VDFIPSAIQE TAVLNGKCIS DGVCFPPVAS  240
QESGIQLECC NTVKDSDYRD EQFCDYSTDN MTGNGSSNNS ASKVGQPSSR RKLRKEKVKK  300
AINLLRSIVP EGHSMDTAAV LEVASQHLKS LQLKLERLEA NQNDKTLSKP

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pgl.1606	0.0	root\| vegetative bud

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	C0PSI6	0.0	C0PSI6_PICSI; Uncharacterized protein