PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pgl004249

Organism

Picea glauca

Taxonomic ID

3330

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

NF-YC

Protein Properties

Length: 348aa MW: 39046.7 Da PI: 7.229

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Pgl#S55349153	PU_unref	Unigene	View CDS
PUT-175a-Picea_glauca-26283	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	178.1	8.2e-56	112	215	1	101
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivp 97 ql++fw+ q ie+++dfknh+lPlarikki+kadedv+misaeaPvl++kace+filelt+rsw+haeenkrrtl+k+diaaa+trtdifdflvdivp Pgl004249 112 QLQMFWAFQmqeIEQVSDFKNHQLPLARIKKIMKADEDVRMISAEAPVLFAKACEMFILELTMRSWIHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVP 211 89**98866789********************************************************************************** PP NF-YC 98 rdel 101 rd+l Pgl004249 212 RDDL 215 87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	1.05E-35	92	206	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	8.0E-38	126	198	IPR009072	Histone-fold
Pfam	PF00808	5.6E-21	134	197	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 348 aa Download sequence Send to blast
XKIERPQREI FIEYVKGFVG GGSAFIARTV LGQDKRGQTA MDHHNHHQHH PSSSSGGAAP 60 QGMSQGYPGG AAAPPTPVGM QGQAGQQPQP GLHQSGAQQA FHHHHMQQQQ QQLQMFWAFQ 120 MQEIEQVSDF KNHQLPLARI KKIMKADEDV RMISAEAPVL FAKACEMFIL ELTMRSWIHA 180 EENKRRTLQK NDIAAAITRT DIFDFLVDIV PRDDLKEEGL GLGFARGGVT PEGSFYYPPP 240 SMPQSPHQQG MMGPSSIMMG RPAPLQMDPS AMYMQQQQPP RPYGMPPHPH QPMWQHPHHP 300 HPHQQQMPDG QSYGHPHQQQ QHLPDGQSYG QHQMTDEHSY GTPPRSAN

Sequence ? help Back to Top

Protein Sequence Length: 348 aa Download sequence Send to blast

XKIERPQREI FIEYVKGFVG GGSAFIARTV LGQDKRGQTA MDHHNHHQHH PSSSSGGAAP  60
QGMSQGYPGG AAAPPTPVGM QGQAGQQPQP GLHQSGAQQA FHHHHMQQQQ QQLQMFWAFQ  120
MQEIEQVSDF KNHQLPLARI KKIMKADEDV RMISAEAPVL FAKACEMFIL ELTMRSWIHA  180
EENKRRTLQK NDIAAAITRT DIFDFLVDIV PRDDLKEEGL GLGFARGGVT PEGSFYYPPP  240
SMPQSPHQQG MMGPSSIMMG RPAPLQMDPS AMYMQQQQPP RPYGMPPHPH QPMWQHPHHP  300
HPHQQQMPDG QSYGHPHQQQ QHLPDGQSYG QHQMTDEHSY GTPPRSAN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	2e-55	120	212	3	95	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	184	190	RRTLQKN

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pgl.2957	0.0	root\| somatic embryo

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Ubiquitous. Present in etiolated seedlings. {ECO:0000269\|PubMed:11250072, ECO:0000269\|PubMed:17322342, ECO:0000269\|PubMed:9662544}.

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015582162.1	6e-77	nuclear transcription factor Y subunit C-1
Swissprot	Q9SMP0	4e-74	NFYC1_ARATH; Nuclear transcription factor Y subunit C-1
TrEMBL	A9NKD3	1e-168	A9NKD3_PICSI; Uncharacterized protein
STRING	XP_002511172.1	3e-76	(Ricinus communis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48590.1	4e-62	nuclear factor Y, subunit C1

Publications ? help Back to Top
Shi H,Chan ZL AtHAP5A modulates freezing stress resistance in Arabidopsis independent of the CBF pathway. Plant Signal Behav, 2015. [PMID:24831307] Shi H,Chan ZL AtHAP5A modulates freezing stress resistance in Arabidopsis independent of the CBF pathway. Plant Signal Behav, 2014. 9(7): p. e29109 [PMID:25763489] Tang Y, et al. Arabidopsis NF-YCs Mediate the Light-Controlled Hypocotyl Elongation via Modulating Histone Acetylation. Mol Plant, 2017. 10(2): p. 260-273 [PMID:27876642] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]