PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl004254
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MYB
Protein Properties Length: 348aa    MW: 39435.8 Da    PI: 6.8188
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55335722PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-35995PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.72.8e-181461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd llv++++ +G g+W++ +++ g++R++k+c++rw++yl
        Pgl004254 14 KGAWSAEEDNLLVKYIQTHGEGNWRSLPKKAGLRRCGKSCRLRWLNYL 61
                     79********************************************97 PP
2Myb_DNA-binding49.97.6e-1667110146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T++E+el+++ +++lG++ W+ Ia +++ gRt++++k++w++
        Pgl004254  67 RGNITADEEELIIRMHALLGNR-WSIIAGRVP-GRTDNEIKNHWNT 110
                      7999******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.907961IPR017930Myb domain
SuperFamilySSF466891.5E-2911108IPR009057Homeodomain-like
SMARTSM007175.7E-151363IPR001005SANT/Myb domain
PfamPF002498.2E-171461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-231568IPR009057Homeodomain-like
CDDcd001673.97E-111661No hitNo description
PROSITE profilePS5129424.61562116IPR017930Myb domain
SMARTSM007173.0E-1566114IPR001005SANT/Myb domain
PfamPF002497.5E-1467110IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.1E-2369116IPR009057Homeodomain-like
CDDcd001672.11E-1071112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MGRAPCCSKV GVNKGAWSAE EDNLLVKYIQ THGEGNWRSL PKKAGLRRCG KSCRLRWLNY  60
LRPCIKRGNI TADEEELIIR MHALLGNRWS IIAGRVPGRT DNEIKNHWNT KLSRKLASRG  120
IDPKTHKFIT TDSSNRAGDR FNQFQSEKPY YCSQRSQHLV SNVPKVVKVG RSTDLVIPHV  180
HNLKADLKVQ ETENKSSSRS LPVESHNTNI SMSSNECYNY TPADSAECAS LISSSDSVEA  240
KCDSRDLHDN GCHWNEKHDD FPEYDVFNFF DVSNAENEIC CNDDYWVDEG SADQFVKQKQ  300
APPQSGQWDK QIDVEGKDNL GYPCMNAHDL SDHANNDVTV MSWEAALW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-241211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.119120.0somatic embryo| vegetative bud
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006854612.14e-71myb-related protein 308 isoform X1
TrEMBLD5AC040.0D5AC04_PICSI; Uncharacterized protein
STRINGERN160792e-70(Amborella trichopoda)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.15e-68myb domain protein 3