PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pgl004261

Organism

Picea glauca

Taxonomic ID

3330

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

Trihelix

Protein Properties

Length: 348aa MW: 39281.2 Da PI: 7.2242

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Pgl#S55333680	PU_unref	Unigene	View CDS
PUT-175a-Picea_glauca-6223	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	78.3	1.1e-24	46	127	2	85
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 W ++e++ Li++ re++ ++++k++k+lWe++s kmrergf rsp++C++kw+nl k+ykk k++ ++ + s +++ ++l Pgl004261 46 WGHDEIRSLIALGREIDGLFNTSKSNKHLWEKISLKMRERGFDRSPTMCTDKWRNLLKEYKKAKHHHDSH--DGSAKMSCCKDL 127 ********************************************************************98..444456666666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	7.503	38	102	IPR017877	Myb-like domain
Pfam	PF13837	5.7E-17	45	121	No hit	No description
CDD	cd12203	5.49E-28	46	109	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 348 aa Download sequence Send to blast
MEVVTNGMQL QAQVQQQHHH HMLLSSDVNG EDHEIKTTPK KRAEVWGHDE IRSLIALGRE 60 IDGLFNTSKS NKHLWEKISL KMRERGFDRS PTMCTDKWRN LLKEYKKAKH HHDSHDGSAK 120 MSCCKDLEEL LRERAKVAPY RSPNKVAALD SYPHFSPKGT GRSPFNLERR LDHDGLPLAL 180 PLSDATAANG TPPWNWRDAT GNGGENHTSY NGKVILVKWG DITRRIGIDG TAEAISGAIR 240 PAFGLRTKRA FWLQDEDGVV HSLDRNMPLG TYILCLDEGL TIKVCNYDES DSLTGTADEK 300 TFYTEEDFRY FLTQRGWSGL QEVGGFRTVD SLNELCPMCV YQRAGSLG

Sequence ? help Back to Top

Protein Sequence Length: 348 aa Download sequence Send to blast

MEVVTNGMQL QAQVQQQHHH HMLLSSDVNG EDHEIKTTPK KRAEVWGHDE IRSLIALGRE  60
IDGLFNTSKS NKHLWEKISL KMRERGFDRS PTMCTDKWRN LLKEYKKAKH HHDSHDGSAK  120
MSCCKDLEEL LRERAKVAPY RSPNKVAALD SYPHFSPKGT GRSPFNLERR LDHDGLPLAL  180
PLSDATAANG TPPWNWRDAT GNGGENHTSY NGKVILVKWG DITRRIGIDG TAEAISGAIR  240
PAFGLRTKRA FWLQDEDGVV HSLDRNMPLG TYILCLDEGL TIKVCNYDES DSLTGTADEK  300
TFYTEEDFRY FLTQRGWSGL QEVGGFRTVD SLNELCPMCV YQRAGSLG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2jmw_A	2e-38	40	126	1	86	DNA binding protein GT-1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pgl.23470	0.0	vegetative bud

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269\|PubMed:10437822, ECO:0000269\|PubMed:15044016, ECO:0000269\|PubMed:7866025}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010248872.1	1e-156	PREDICTED: trihelix transcription factor GT-1-like
Swissprot	Q9FX53	1e-134	TGT1_ARATH; Trihelix transcription factor GT-1
TrEMBL	A9NQR4	0.0	A9NQR4_PICSI; Uncharacterized protein
STRING	XP_010248872.1	1e-156	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13450.1	1e-135	Trihelix family protein

Publications ? help Back to Top
Le Gourrierec J,Li YF,Zhou DX Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complex. Plant J., 1999. 18(6): p. 663-8 [PMID:10417717]