 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Pgl004265 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
|
| Family |
HB-other |
| Protein Properties |
Length: 347aa MW: 38836.6 Da PI: 6.865 |
| Description |
HB-other family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| gnl|UG|Pgl#S55337046 | PU_unref | Unigene | View CDS |
| PUT-175a-Picea_glauca-17428 | PU_ref | plantGDB | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 14.5 | 6e-05 | 41 | 59 | 38 | 56 |
TS-HHHHHHHHHHHHHHHH CS
Homeobox 38 gLterqVkvWFqNrRakek 56
++ +q+ +WFqNrR ++
Pgl004265 41 TVQWKQIWNWFQNRRHAQR 59
67789**********8776 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 347 aa
Download sequence Send
to blast |
MEIADMEKTL EESKGANPPR DTVIYLAEKF SAAREQVGKV TVQWKQIWNW FQNRRHAQRS 60
KSAKMAVKLN SIPSSSDDSL AKRAATNSFA SLSGRRAPDS PKMEFEARSA RDQAWYDVAG 120
FLTHRMLELD DPEVQVRFEG FGAEEDEWVN VKRSVRRRSL PCEVSECIAV LPGDLILCFQ 180
EGKEQALYYD AHVLDVQRKH HDIRGCRCRF LVRYDHDQIE EVVPLRKVCR RPETDFRLQA 240
LHASKRSSPT ELGQGPQETK DSSTGKISFV SSKEPKGSGD SMDSNNQLAS MPMVSLGDAL 300
TFAKSQPCLP DSALNSSERS GNPSPSSSIP QILDSKAADA EMKLADQ
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 4iuq_A | 7e-48 | 100 | 233 | 1 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
| 4iuq_B | 7e-48 | 100 | 233 | 1 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
| 4iur_A | 7e-48 | 100 | 233 | 1 | 134 | SHH1 SAWADEE |
| 4iur_B | 7e-48 | 100 | 233 | 1 | 134 | SHH1 SAWADEE |
| 4iut_A | 7e-48 | 100 | 233 | 1 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
| 4iut_B | 7e-48 | 100 | 233 | 1 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
| 4iuu_A | 7e-48 | 100 | 233 | 1 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
| 4iuu_B | 7e-48 | 100 | 233 | 1 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
| 4iuv_A | 7e-48 | 100 | 233 | 1 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
| 4iuv_B | 7e-48 | 100 | 233 | 1 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | May play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM. |
| Best hit in Arabidopsis thaliana ? help
Back to Top |
| Hit ID |
E-value |
Description |
| AT3G18380.1 | 1e-103 | sequence-specific DNA binding transcription factors;sequence-specific DNA binding |
