PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pgl004295

Organism

Picea glauca

Taxonomic ID

3330

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

Trihelix

Protein Properties

Length: 346aa MW: 40336.6 Da PI: 7.1661

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Pgl#S55334148	PU_unref	Unigene	View CDS
PUT-175a-Picea_glauca-40956	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	79.5	4.8e-25	34	114	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W ++e++++++ r+e+e+ ++++k++k+lWe++s++mrerg+ rsp++Ck+kw+nl k+y+k++ ++k +t+++ y++++e Pgl004295 34 WVQDEIQTMLAYRKELESLFNTSKSNKHLWEQISQRMRERGYDRSPTMCKDKWRNLLKDYRKLRYQQKPGTPKVG----YYKDIE 114 ********************************************************************9977665....888876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	8.537	26	90	IPR017877	Myb-like domain
SMART	SM00717	6.2E-4	30	92	IPR001005	SANT/Myb domain
CDD	cd12203	3.84E-25	32	95	No hit	No description
Pfam	PF13837	9.8E-19	33	114	No hit	No description
Gene3D	G3DSA:1.10.10.60	9.3E-5	34	91	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.59E-5	57	103	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 346 aa Download sequence Send to blast
MPFQQQQQQQ HMVLTESSGD DHELRAPKKR AETWVQDEIQ TMLAYRKELE SLFNTSKSNK 60 HLWEQISQRM RERGYDRSPT MCKDKWRNLL KDYRKLRYQQ KPGTPKVGYY KDIEDVMVER 120 AKHTPYRSPM KYESAIQMVP KDFDRPALNI DQRLDNDSQT TSLLSHESPL TNGMSPWSWR 180 DTSANGLPQW NAGIDRSVPA GRVIVVKQGD VTRRIGIDGS AEAIKDAIRS VFGLRTKRTF 240 WLEDEDGVVR CFDRDMPLRT YNLHIDPGLT VKICYFDGSG RPTVEPEEKT LYCEDDFHEL 300 LVRRGWQSLR EVGGYKDIDT MEELQPMCAY QQGGFKDLGL YIPKVE

Sequence ? help Back to Top

Protein Sequence Length: 346 aa Download sequence Send to blast

MPFQQQQQQQ HMVLTESSGD DHELRAPKKR AETWVQDEIQ TMLAYRKELE SLFNTSKSNK  60
HLWEQISQRM RERGYDRSPT MCKDKWRNLL KDYRKLRYQQ KPGTPKVGYY KDIEDVMVER  120
AKHTPYRSPM KYESAIQMVP KDFDRPALNI DQRLDNDSQT TSLLSHESPL TNGMSPWSWR  180
DTSANGLPQW NAGIDRSVPA GRVIVVKQGD VTRRIGIDGS AEAIKDAIRS VFGLRTKRTF  240
WLEDEDGVVR CFDRDMPLRT YNLHIDPGLT VKICYFDGSG RPTVEPEEKT LYCEDDFHEL  300
LVRRGWQSLR EVGGYKDIDT MEELQPMCAY QQGGFKDLGL YIPKVE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2jmw_A	8e-34	28	112	1	86	DNA binding protein GT-1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pgl.15132	0.0	somatic embryo

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269\|PubMed:10437822, ECO:0000269\|PubMed:15044016, ECO:0000269\|PubMed:7866025}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006845117.2	1e-132	trihelix transcription factor GT-1
Swissprot	Q9FX53	1e-118	TGT1_ARATH; Trihelix transcription factor GT-1
TrEMBL	A0A0D6QU89	0.0	A0A0D6QU89_ARACU; Uncharacterized protein
STRING	ERN06792	1e-132	(Amborella trichopoda)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13450.1	1e-118	Trihelix family protein

Publications ? help Back to Top
Le Gourrierec J,Li YF,Zhou DX Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complex. Plant J., 1999. 18(6): p. 663-8 [PMID:10417717]