PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pgl004483

Organism

Picea glauca

Taxonomic ID

3330

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

Trihelix

Protein Properties

Length: 336aa MW: 37898.9 Da PI: 7.5514

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Pgl#S55347481	PU_unref	Unigene	View CDS
PUT-175a-Picea_glauca-32576	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	88.2	9.2e-28	33	114	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W ++e++aLi++rrem++ ++++k++k+lWe++s kmrergf rsp++C++kw+nl k+ykk+k++++++ s +++ +++le Pgl004483 33 WVQEEIKALIALRREMDSLFNTSKSNKHLWEQISLKMRERGFDRSPTMCTDKWRNLLKEYKKVKHQDRGG---GSAKMSCYKDLE 114 ********************************************************************97...555678899887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.2E-4	23	91	IPR009057	Homeodomain-like
PROSITE profile	PS50090	8.432	25	89	IPR017877	Myb-like domain
SMART	SM00717	3.3E-6	29	91	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	1.89E-5	29	90	IPR009057	Homeodomain-like
CDD	cd12203	3.10E-30	31	96	No hit	No description
Pfam	PF13837	7.1E-21	32	116	No hit	No description
SuperFamily	SSF46689	1.89E-5	180	201	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 336 aa Download sequence Send to blast
MHSAAQQQTQ MILADSSGED HEVKAPKKRA ETWVQEEIKA LIALRREMDS LFNTSKSNKH 60 LWEQISLKMR ERGFDRSPTM CTDKWRNLLK EYKKVKHQDR GGGSAKMSCY KDLEELLRER 120 AKNAAYKTPP ATAAAKMDTY IHFSPKGGGK SSLNLERRLD HDGHPLAIAS VDAATGNGVP 180 PWNWRDTTAN GDHHTSYGGK VIVVKCGEFT RRIGVDGTAE AIKEAVKCSF GLRTKRAFWL 240 EDEDGVIRCL DRDMPLGTYI LHLDDGLTIK VCIYDESDRL TGATEEKTLY TEEDFRDFLT 300 RRGWSGLQEV GGFRAIDSLD DLRPLCVYQR AGLLGE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2jmw_A	2e-44	27	112	1	86	DNA binding protein GT-1
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Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pgl.22784	0.0	root\| stem

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269\|PubMed:10437822, ECO:0000269\|PubMed:15044016, ECO:0000269\|PubMed:7866025}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010250844.1	0.0	PREDICTED: trihelix transcription factor GT-1
Swissprot	Q9FX53	1e-161	TGT1_ARATH; Trihelix transcription factor GT-1
TrEMBL	A0A0D6QVI3	0.0	A0A0D6QVI3_ARACU; Uncharacterized protein
STRING	XP_010250844.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13450.1	1e-157	Trihelix family protein

Publications ? help Back to Top
Le Gourrierec J,Li YF,Zhou DX Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complex. Plant J., 1999. 18(6): p. 663-8 [PMID:10417717]