PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl004538
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MYB_related
Protein Properties Length: 333aa    MW: 36951.6 Da    PI: 7.0559
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55341298PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-18521PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.25.1e-152260646
                     HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                     +e++e+l+ a++++G++ W+ Iar ++ gRt++ +k++w+ 
        Pgl004538 22 EEDEEKLLAAHRLYGNK-WAMIARLFP-GRTDNAVKNHWHV 60
                     79***************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd001676.00E-111059No hitNo description
PROSITE profilePS5129417.2581266IPR017930Myb domain
SMARTSM007172.9E-91664IPR001005SANT/Myb domain
SuperFamilySSF466893.67E-122269IPR009057Homeodomain-like
PfamPF002491.2E-112259IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.9E-152260IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
RVAGFGGLIS WTRESTEGLS XEEDEEKLLA AHRLYGNKWA MIARLFPGRT DNAVKNHWHV  60
IMARRYREQS SAFGRRKLTQ VHRREKRVCT EDETGTASSN MWVDKFSSFK SSHDVILRRG  120
SVCKSQIPGE NASCVSVFGA PRVDDDERCG NFDRLQQRIG AASIAPPHHH QQRSYISSLD  180
AVQSRIFFEG SREMKINNNY NKAVDMLGSN VDNYHILVSQ MEGESSSPSQ LTTDSCAAVS  240
LLQGAFASSK RSSVVNTNFS LGHQQNVVQY GYSDSSASDQ LSAVEASYAD NSSTTGNNNY  300
LMATRSLVFE EEAEIEFKKP NGGFIDFLGV GTT
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A222UAB31e-117A0A222UAB3_GINBI; R2R3MYB12
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26780.14e-29myb domain protein 117