PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl004763
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MYB_related
Protein Properties Length: 321aa    MW: 35536.4 Da    PI: 7.2705
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55342520PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-4877PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.23.9e-182269148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++lv +++++G g+W++ +++ g+ R++k+c++rw +yl
        Pgl004763 22 KGPWTPEEDQKLVTYIQEHGHGSWRALPQKAGLLRCGKSCRLRWANYL 69
                     79******************************99************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.2E-241379IPR009057Homeodomain-like
PROSITE profilePS5129422.4841773IPR017930Myb domain
SMARTSM007174.9E-142171IPR001005SANT/Myb domain
PfamPF002496.6E-172269IPR001005SANT/Myb domain
SuperFamilySSF466891.52E-202390IPR009057Homeodomain-like
CDDcd001672.34E-112469No hitNo description
PROSITE profilePS500904.26370119IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
TKPKWREIMG RAPCCEKVXL KKGPWTPEED QKLVTYIQEH GHGSWRALPQ KAGLLRCGKS  60
CRLRWANYLR PDIKRGKFSV QEESKILGLN SVGGFDGMKI TQKWDKFQDL RSGTKLEQCN  120
LSALGGSLGC YNPVENGQIE DRASKTSYLS LLQQAMCPSA QGSKILYNEA RKLVESQRNR  180
QANAAVTPHF NAFHLDQSDN CDEKKPTIVS EKAHSDVQSS SHEENVELPD SHHELLLPSV  240
MLNDGNCSSA RSDVSELTKT EQGADTSYDK VGNSDNILSE FQHIHSDEIS SSGGFKSGSS  300
NMFSVCNSLP NGNHSGVQSI F
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.207370.0somatic embryo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A222UAC02e-45A0A222UAC0_GINBI; R2R3MYB16
TrEMBLA9P0V47e-47A9P0V4_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15310.17e-46myb domain protein 16