PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl004888
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family Trihelix
Protein Properties Length: 313aa    MW: 35253.9 Da    PI: 8.9842
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55341971PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-18573PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix107.87.4e-3494178186
   trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                rW+k e++ Li++r++me+r++++ +k+plWee++ +m++ g+ rs+k+Ckekwen+nk+++k k++++kr +e+s+tcpyf+ql+
  Pgl004888  94 RWPKPEIMSLIRLRTNMERRFQEAGAKGPLWEEIATNMSRLGYDRSAKRCKEKWENINKYFRKAKDSNRKR-PENSKTCPYFQQLD 178
                8*********************************************************************8.9999********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.22487151IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.608.7E-492150IPR009057Homeodomain-like
CDDcd122031.74E-3093158No hitNo description
PfamPF138378.0E-2393180No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
XKESKKELAE KKRGDVKKRL VWNASISSGP TNEPVRRAAD AAFISALQKI TGQNLQLPEI  60
FAPPPPQITM NPEAQDQQDM VIREKETYDP NNKRWPKPEI MSLIRLRTNM ERRFQEAGAK  120
GPLWEEIATN MSRLGYDRSA KRCKEKWENI NKYFRKAKDS NRKRPENSKT CPYFQQLDSL  180
YRQGALGFSN GGSSTTATST STKVSNQPDG VHDQTTTDEL VLQPCTSSHE NDERREAVEI  240
LGQLMPSSEG GCTHNNINND NNNNGSNGHP TPGASSNNNN CVQFFSGAAE NGCNWEGYPM  300
KLKIKQQQQH QQH
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.65650.0root| stem| vegetative bud
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGPP1S19_341V6.13e-53(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76890.22e-42Trihelix family protein