PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl004919
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family SBP
Protein Properties Length: 312aa    MW: 34620.6 Da    PI: 7.1928
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55351219PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-47684PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP53.18.3e-17165207143
                --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE- CS
        SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfC 43 
                +Cqv++C+adl++ak+yhrrhkvCe+h+ka+++lv  l+q f 
  Pgl004919 165 MCQVDDCKADLNNAKDYHRRHKVCEMHAKANKALVGRLMQGFV 207
                6************************************999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.105.8E-17160206IPR004333Transcription factor, SBP-box
PROSITE profilePS5114113.169163240IPR004333Transcription factor, SBP-box
SuperFamilySSF1036123.66E-16164217IPR004333Transcription factor, SBP-box
PfamPF031101.4E-10166203IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
IYQQQKQQQT QLYSSRGYNF MSKGKHIMED HGWDGNNWEW DSNRFIARPL NIDKGSGFQG  60
KQLLSDGPQS AHGISSDMYS KNDDAYNNGF HSYNMNDASE KRRKVSVVEE EETAEEEEAA  120
AACLTLKLGG SDYPVAETDA DAASGGSKNG KRSRGLPTSS HHYPMCQVDD CKADLNNAKD  180
YHRRHKVCEM HAKANKALVG RLMQGFVSSV ADVGPMRPAD YARNKHCPWP EAAVAVVEGA  240
AVAGNLPAGD AERVLRRVEC NLTAPTCTVS MAKIEDLPPF MQPHVVGAPQ MWVRLFRHLA  300
HAVDYYNKAH RP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj0_A3e-14166206646squamosa promoter-binding protein-like 12
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0C9RMY98e-41A0A0C9RMY9_9SPER; TSA: Wollemia nobilis Ref_Wollemi_Transcript_9851_4110 transcribed RNA sequence
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G20980.12e-17squamosa promoter binding protein-like 14