PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pgl004923

Organism

Picea glauca

Taxonomic ID

3330

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

NF-YC

Protein Properties

Length: 312aa MW: 35432.6 Da PI: 6.6793

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Pgl#S48362548	PU_unref	Unigene	View CDS
gnl\|UG\|Pgl#S55343455	PU_unref	Unigene	View CDS
PUT-175a-Picea_glauca-793	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	162.2	7.7e-51	119	224	1	102
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkad.edvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdiv 96 q+++fw++q ie+a df+nh+lPlarikki+k+d e+v+misaeaPv+++kace+fi eltlr+w+h+eenkrrtl+k+diaaa++rtdifdfl+div Pgl004923 119 QIEVFWANQmqeIEQAVDFRNHSLPLARIKKIMKSDdENVRMISAEAPVVFAKACEMFINELTLRAWIHTEENKRRTLQKNDIAAAIARTDIFDFLIDIV 218 6889**9878899***************96267********************************************************* PP NF-YC 97 prdelk 102 prdelk Pgl004923 219 PRDELK 224 *975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	1.21E-32	91	214	IPR009072	Histone-fold
Pfam	PF00808	1.9E-22	141	205	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	8.7E-37	142	220	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 312 aa Download sequence Send to blast
QPDVTEDLPA LFGFRSQISP SVEERLVSIQ NSGIAALGFD FGXNMEEHSA MQHMPMHYRA 60 MPYPNAQIQP NIAAHGAFQQ PPIHAHHHAL SSHHNQLPYQ HQQQIHQHQR QLHHQQQQQI 120 EVFWANQMQE IEQAVDFRNH SLPLARIKKI MKSDDENVRM ISAEAPVVFA KACEMFINEL 180 TLRAWIHTEE NKRRTLQKND IAAAIARTDI FDFLIDIVPR DELKEDQVIN LGNPRSALSV 240 GSSSTNAAAG ANSIPYYYLP NQHSVPHGVF VGKPMDPTIY MQQPQSPVAY MPNIWQWGHM 300 QADQSKSPNP GS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	2e-50	127	220	3	95	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	192	198	RRTLQKN

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pgl.22173	0.0	stem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Ubiquitous. Present in etiolated seedlings. {ECO:0000269\|PubMed:11250072, ECO:0000269\|PubMed:17322342}.

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters (By similarity). Involved in the abscisic acid (ABA) signaling pathway. {ECO:0000250, ECO:0000269\|PubMed:17322342}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008356118.2	1e-73	nuclear transcription factor Y subunit C-2-like
Refseq	XP_018847918.1	1e-73	PREDICTED: nuclear transcription factor Y subunit C-2
Swissprot	Q9FMV5	3e-64	NFYC4_ARATH; Nuclear transcription factor Y subunit C-4
TrEMBL	A9NTJ8	0.0	A9NTJ8_PICSI; Uncharacterized protein
STRING	XP_008346078.1	9e-74	(Malus domestica)
STRING	XP_008356118.1	9e-74	(Malus domestica)
STRING	XP_008372003.1	9e-74	(Malus domestica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G56170.2	4e-63	nuclear factor Y, subunit C2

Publications ? help Back to Top
Hwang YH, et al. Functional conservation of rice OsNF-YB/YC and Arabidopsis AtNF-YB/YC proteins in the regulation of flowering time. Plant Cell Rep., 2016. 35(4): p. 857-65 [PMID:26754793] Liu X, et al. The NF-YC-RGL2 module integrates GA and ABA signalling to regulate seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 12768 [PMID:27624486] Myers ZA, et al. NUCLEAR FACTOR Y, Subunit C (NF-YC) Transcription Factors Are Positive Regulators of Photomorphogenesis in Arabidopsis thaliana. PLoS Genet., 2016. 12(9): p. e1006333 [PMID:27685091] Tang Y, et al. Arabidopsis NF-YCs Mediate the Light-Controlled Hypocotyl Elongation via Modulating Histone Acetylation. Mol Plant, 2017. 10(2): p. 260-273 [PMID:27876642] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722] Qi M, et al. QQS orphan gene and its interactor NF-YC4 reduce susceptibility to pathogens and pests. Plant Biotechnol. J., 2019. 17(1): p. 252-263 [PMID:29878511]