PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl004927
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family Trihelix
Protein Properties Length: 311aa    MW: 35139.2 Da    PI: 8.2301
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S48357011PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-1988PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix50.84.4e-1617106186
   trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergfe..rspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                +W++  ++ L++a++ ++++ +rg+l+ ++Weev +++  r++g++  ++p qCk+k+e ++k+y+ ++    +++  + s++p+f++++
  Pgl004927  17 EWSDGAIHSLLDAYEAKWNHRNRGNLRVGDWEEVCSHVsnRSGGVKplKTPAQCKNKIEGMKKKYRSEALEICSNNGVNCSSWPFFSRMD 106
                5*************************************99889996447*******************99988888888899******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.1E-1617106No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
XSSKNSRDNE EIFKKGEWSD GAIHSLLDAY EAKWNHRNRG NLRVGDWEEV CSHVSNRSGG  60
VKPLKTPAQC KNKIEGMKKK YRSEALEICS NNGVNCSSWP FFSRMDLMLR CPTRNAGIPG  120
GMDAGYQGLS LMENGEIFGF HEEYHTYLRH PNHQESEQEE DVSNHLLQTN ENFASILPES  180
DTSAPGCRLV ASPSHNHSPK PNPREKETRP NKAKLQKTGN KSCDFVVSSI KSFADSILKL  240
QHTKMEMYKD AERLRAEAEE KRAELDLRRT EIIMNTQLQI AELLSCKSHR RKPAASTPVH  300
LTTATINSIS L
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.210640.0cone
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54390.13e-28sequence-specific DNA binding transcription factors