PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl004928
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family C2H2
Protein Properties Length: 311aa    MW: 34695 Da    PI: 7.1886
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55340939PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-23602PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.10.000286183123
               EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
               y+C  C++ F++   L  H+++H
  Pgl004928 61 YSCDFCKRDFRSAQALGGHMNVH 83
               99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.19E-65888No hitNo description
PROSITE profilePS5015711.1156188IPR007087Zinc finger, C2H2
PfamPF139121.6E-56184IPR007087Zinc finger, C2H2
PROSITE patternPS0002806383IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MAANLMITFR EDVPAAGTTE TWMSRGLIPP RVEDGNESWE ERAFAENTAA LIGGIWPPRS  60
YSCDFCKRDF RSAQALGGHM NVHRRDRALL RQSSSTHLAP PDHQRWSSPS PVRPEIPSHY  120
QLPVFNSNFD ENSWLNPVTP NPSIVSSSQL LPSSSIMPAP SLPINSHITY YPMQQQRRHE  180
ILPSTVLSIS PYSPSEHAFP TFPSSPPVSN SLAMNIPKSL HSMEISGFDR RHGGFASSVA  240
ESAAVLRKLQ QARIFRPCFP VTCLRKQNKS SSVHDIRINN LQHEEAINLD EDHDSAVDGL  300
DLELRLGQTK S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A3e-125683229superman protein
2l1o_A3e-125683229Transcriptional regulator SUPERMAN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37740.17e-27zinc-finger protein 10