PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl005053
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MYB_related
Protein Properties Length: 305aa    MW: 33823.3 Da    PI: 5.6543
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55346051PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-44624PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.11e-08246292246
                      SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46 
                      + W+  Ed  l++a k ++++   +W+++a+ ++ g++  qc  r+  
        Pgl005053 246 LGWSSAEDIALLNALKTFPKDtnmRWEKVAAAVP-GKSKTQCMKRFSE 292
                      67********************************.*********9965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512935.408150206IPR017884SANT domain
SMARTSM007172.8E-4151204IPR001005SANT/Myb domain
CDDcd001670.00773154201No hitNo description
Gene3DG3DSA:1.10.10.605.8E-7242293IPR009057Homeodomain-like
PROSITE profilePS512939.486243298IPR017884SANT domain
SuperFamilySSF466891.09E-11244294IPR009057Homeodomain-like
SMARTSM007173.1E-8244296IPR001005SANT/Myb domain
PfamPF002498.2E-8248292IPR001005SANT/Myb domain
CDDcd001671.78E-7248294No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MDYYDEDPRP RFQFQASSIP IPQQSASIDR KHAAFCIGIG TLIFSYGCLL PGIWQILLAW  60
IGLSLAIGPL APISLTGGDI RVGCGEILEE PQIETPKLEP ERKNYRGKAK RSENSNPEIP  120
ISNIPRSDEI PEENKNGEAD ARVSVVSRVS DDEEWTAEDV ELLKKQLSKN PPGKPGRYEA  180
IAEAFRGARS VDSIVKKAKS LGERKPGDDD SYAKFLAKRK ISDKIEMNLA EGADLADEEE  240
DRGKKLGWSS AEDIALLNAL KTFPKDTNMR WEKVAAAVPG KSKTQCMKRF SELKLNFRNS  300
KASDT
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.116680.0somatic embryo| stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D6R8P11e-133A0A0D6R8P1_ARACU; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45420.12e-57MYB_related family protein