PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl005153
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family LBD
Protein Properties Length: 301aa    MW: 31809.6 Da    PI: 6.8713
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55332842PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-31880PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260139.51.1e-4326124199
     DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 
                +CaaCk+lrrkC+ +C++apyfp eqp+kfa vhk+FGasn++kll++l++e+reda+ssl+yeAear++dPvyG+vg i+ lq q++ql+ ela++++
  Pgl005153  26 PCAACKFLRRKCTVECIFAPYFPPEQPHKFASVHKIFGASNISKLLNELSPEQREDAVSSLAYEAEARVKDPVYGCVGAISVLQGQVQQLQRELAEARA 124
                7**********************************************************************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089127.61625126IPR004883Lateral organ boundaries, LOB
PfamPF031955.5E-4326123IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
XCKEMAASSS TSSSASASGS STASSPCAAC KFLRRKCTVE CIFAPYFPPE QPHKFASVHK  60
IFGASNISKL LNELSPEQRE DAVSSLAYEA EARVKDPVYG CVGAISVLQG QVQQLQRELA  120
EARADLAHYT AMEMGIQGIH GVPVHHSSQG LLELRRERIL ELARLQGSGG PCSEALGAAA  180
AAAGIYNITS CPPPTLLPPT HPPPACTTCT TIASEGGSGC CSSGGGGXRK LWQHQTLFIS  240
TMINVHHLLN MENEVTQFFL SKIVSSSSSI TFATICSRSS AAVPSFNMMA HMASENPLVE  300
D
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-56161351120LOB family transfactor Ramosa2.1
5ly0_B2e-56161351120LOB family transfactor Ramosa2.1
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.204820.0stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024403438.13e-59LOB domain-containing protein 6-like
TrEMBLA0A2K1IZ186e-58A0A2K1IZ18_PHYPA; Uncharacterized protein
STRINGPP1S170_78V6.11e-58(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63090.45e-59LBD family protein