PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl005308
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MYB
Protein Properties Length: 294aa    MW: 32632.3 Da    PI: 9.0833
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55345179PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-25110PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.21e-091962344
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                      WT e  +++ +a + + ++   +W+++a++++ g+t+ ++k ++
        Pgl005308 19 VWTLEQNKRFENALADFDKDtpdRWDKVAARLP-GKTATDVKKHY 62
                     6********************************.**********9 PP
2Myb_DNA-binding47.93e-15127171347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ +++ + +++G+g+W++I+r +   Rt+ q+ s+ qky
        Pgl005308 127 PWTEEEHRQFLMGLHKHGKGDWRSISRNFVVSRTPTQVASHAQKY 171
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007176.6E-81668IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-41866IPR009057Homeodomain-like
SuperFamilySSF466892.42E-111873IPR009057Homeodomain-like
PfamPF002493.1E-71963IPR001005SANT/Myb domain
PROSITE profilePS500906.7952066IPR017877Myb-like domain
CDDcd001674.26E-72062No hitNo description
PROSITE profilePS5129418.822120176IPR017930Myb domain
SuperFamilySSF466895.31E-17121175IPR009057Homeodomain-like
TIGRFAMsTIGR015575.4E-17123174IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.602.2E-12124170IPR009057Homeodomain-like
SMARTSM007177.1E-13124174IPR001005SANT/Myb domain
CDDcd001673.95E-11127172No hitNo description
PfamPF002495.0E-13127171IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MWEMDLPSQG TSLSSSGSVW TLEQNKRFEN ALADFDKDTP DRWDKVAARL PGKTATDVKK  60
HYDDLVDDVT CIEAGCVALP TYSNSSCTLE WIEGKSGDMH GLKQQFGSGG RGSSTKSSEQ  120
ERKKGVPWTE EEHRQFLMGL HKHGKGDWRS ISRNFVVSRT PTQVASHAQK YFIRLGSDNK  180
NKRRSSIHDI TTVNGTDRRS FPLPQASTRQ TNSPPTPAEI NQSPCLTYPS PISRGPLINS  240
LGSQADGNPL FSSYYPLSLY TQRGFGGHSP RTFIPDSSIG MPHFGYPGRP AMQY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A8e-171285376RADIALIS
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.153360.0root
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Detected in the apical inflorescence meristem, in bract primordia arising in its periphery and in floral meristems produced in the axils of bracts (stages 0-3). From stage 3 to stage 8, detected in all floral organs irrespective of their dorsoventral positions. From stage 9, barely detectable in bracts, sepals, and stamens. In the corolla, however, expression was maintained and enhanced in some regions. Within ventral and lateral petals at stage 9, asymmetric pattern of expression with high levels of transcripts in the inner epidermis of the furrow and very reduced levels in the remaining cell layers. In the dorsal petals, from stage 9 onward, detected but with a more even distribution across cell layers than in the ventral petal. {ECO:0000269|PubMed:11937495}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007205616.16e-82transcription factor DIVARICATA
SwissprotQ8S9H73e-77DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A0D6R2Q11e-100A0A0D6R2Q1_ARACU; Uncharacterized protein
STRINGEMJ068152e-81(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.11e-73MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]