PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl005354
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family bHLH
Protein Properties Length: 292aa    MW: 31940.2 Da    PI: 8.1023
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55345548PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-34397PU_refplantGDBView CDS
PUT-175a-Picea_glauca-34398PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.51.3e-14112158354
                HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
        HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                ++h+e+ErrRR+riNs +++Lr llP+      +K +Ka+ L ++++++k+L
  Pgl005354 112 KNHSEAERRRRQRINSHLATLRGLLPSG-----TKTDKASLLAEVIDHVKDL 158
                78*************************8.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.666109158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.1E-12112158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.4E-15112182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.63E-13112160No hitNo description
SuperFamilySSF474592.22E-14113165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-13115164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550219.15E-5196268No hitNo description
Gene3DG3DSA:3.30.70.2601.5E-6196268No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MAMFTGNYSL RKSLAKRGFH QQTFPSGYSD PTSLTHLPDF QTGAFPFSSY GSHLQTTVSY  60
LNTNGVRHCE QNQLAQNGGS SLVLDDARGE LVNASKMTLK QILEAKALAA SKNHSEAERR  120
RRQRINSHLA TLRGLLPSGT KTDKASLLAE VIDHVKDLKR RASEIAQVGP VPTDVDELKV  180
EEDGAIEEGK ILIKASLCCD DRPDLMPDLI QTFQTLGLIT VKAEISTLAG RVKNVFLVTD  240
GEKDFVESQT RLSINSIQEA LRAVMERTAA SGELSAGSSI SNKRQRILPF DA
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.55830.0root| somatic embryo| stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002978655.27e-75transcription factor bHLH30
RefseqXP_002984590.29e-75transcription factor bHLH30
SwissprotQ9S7Y11e-56BH030_ARATH; Transcription factor bHLH30
TrEMBLA0A0D6R7H81e-99A0A0D6R7H8_ARACU; Uncharacterized protein
STRINGXP_010262767.11e-63(Nelumbo nucifera)
STRINGEFJ142352e-65(Selaginella moellendorffii)
STRINGEFJ201022e-65(Selaginella moellendorffii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.16e-59bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ohashi-Ito K, et al.
    A bHLH complex activates vascular cell division via cytokinin action in root apical meristem.
    Curr. Biol., 2014. 24(17): p. 2053-8
    [PMID:25131670]
  3. Katayama H, et al.
    A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem.
    Curr. Biol., 2015. 25(23): p. 3144-50
    [PMID:26616019]