PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl005653
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family E2F/DP
Protein Properties Length: 278aa    MW: 31403.6 Da    PI: 9.7981
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55341084PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-17029PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP85.83.3e-271091371
    E2F_TDP  3 eksLrlltqkflklleksee.givtlnevakeLvse................dvknkrRRiYDilNVLealnliekkekneirwkg 71
               +++Lr++++k   +++k+e+ g +t+neva+eLv+e                d+kn+rRR+YD+lNVL+a+++i+k ek+eirwkg
  Pgl005653 10 GRGLRHFSMK---VCKKVESkGWTTYNEVASELVAEfvnpnsthfsqdqqqfDEKNIRRRVYDALNVLMAMDIISK-EKKEIRWKG 91
               589*******...*****999*******************************************************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0094043.3E-1101275IPR015648Transcription factor DP
SMARTSM013723.2E-31891IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.9E-43996IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467854.49E-221192IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023191.7E-241191IPR003316E2F/DP family, winged-helix DNA-binding domain
CDDcd144589.07E-4196199IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440747.32E-4198217No hitNo description
SMARTSM011382.7E-5698274IPR014889Transcription factor DP, C-terminal
PfamPF087813.6E-4099214IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007049Biological Processcell cycle
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
HRSSIGVTGG RGLRHFSMKV CKKVESKGWT TYNEVASELV AEFVNPNSTH FSQDQQQFDE  60
KNIRRRVYDA LNVLMAMDII SKEKKEIRWK GLPTTNLSDI EQLKTERKRL TSRIDKKRAY  120
LQELKEQITG LQNLVRRNER VYGSGNNPSG GVTLPFILVK TRPQATVDIE ISEDMQLVHF  180
DFNSTPFELH DDAFVLKAMR FCKTPDSSGP VDEKPGNESA FTKKYSVLST MHKGTSSPHS  240
TRTSDTDSYS LSSIPGKICS SSPDPGIIKA RIKNENFI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B1e-38294191PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.254900.0stem
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed during the whole cell cycle. {ECO:0000269|PubMed:11669580}.
UniprotTISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:16920782}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027123244.11e-120transcription factor-like protein DPB isoform X1
RefseqXP_027123245.11e-120transcription factor-like protein DPB isoform X2
RefseqXP_027173114.11e-120transcription factor-like protein DPB isoform X1
RefseqXP_027173115.11e-120transcription factor-like protein DPB isoform X2
RefseqXP_027173131.11e-120transcription factor-like protein DPB isoform X1
RefseqXP_027173132.11e-120transcription factor-like protein DPB isoform X2
SwissprotQ9FNY21e-108DPB_ARATH; Transcription factor-like protein DPB
TrEMBLD5ABL11e-122D5ABL1_PICSI; Uncharacterized protein
STRINGEOY079191e-117(Theobroma cacao)
STRINGXP_010241817.11e-117(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-110Transcription factor DP