PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl005709
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family HB-other
Protein Properties Length: 276aa    MW: 29911.6 Da    PI: 6.0858
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55331803PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-8169PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox71.11.3e-22101157157
                TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
   Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                ++kR++ +++ql +Le+ F+ ++ ps+++r +LA++lg++ r+V++WFqN+Rak k+
  Pgl005709 101 KKKRQRTSPDQLAILEQIFQTDKMPSQQTRVQLADQLGMSSRRVQIWFQNKRAKVKR 157
                79****************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.4E-2186157IPR009057Homeodomain-like
SuperFamilySSF466891.92E-2193158IPR009057Homeodomain-like
PROSITE profilePS5007119.07998158IPR001356Homeobox domain
SMARTSM003898.2E-22100162IPR001356Homeobox domain
CDDcd000863.74E-22101157No hitNo description
PfamPF000465.3E-20101157IPR001356Homeobox domain
PRINTSPR000313.1E-5129138IPR000047Helix-turn-helix motif
PROSITE patternPS000270133156IPR017970Homeobox, conserved site
PRINTSPR000313.1E-5138154IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MMMDLGLVES VPSLDRDHNI MYQKAAKLEH SFDGIQAKAS TLRSELTGSF GIDAAQVVEL  60
DLYDDDSEDE GEVMLLAMIL LQLHGKFPGG FPDPLQHHHN KKKRQRTSPD QLAILEQIFQ  120
TDKMPSQQTR VQLADQLGMS SRRVQIWFQN KRAKVKRGIS KSSEITPDSM SPGQLDGRDP  180
ALSSSSGASE PSSPIVPDTN TTSSFFPTQG SLSSSSSSSS SISSPPNSPA VVPSSPSLPH  240
TLRQHSSQVS PIQFSLSPIA SQPIMLTSEF SAMTAC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1100105KKKRQR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.69430.0root
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.22e-10homeobox 7