PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl005714
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MYB_related
Protein Properties Length: 275aa    MW: 29513.2 Da    PI: 7.3014
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55332804PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-2254PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.91.5e-10107151347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ l++ +  ++G+ +W++I+r     Rt+ q+ s+ qky
        Pgl005714 107 AWTEEEHRLFLLGLDKYGKSDWRSISRNCVISRTPMQVASHAQKY 151
                      6**************************99989************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM0071714143IPR001005SANT/Myb domain
PROSITE profilePS512938.33145IPR017884SANT domain
CDDcd001671.10E-4241No hitNo description
SuperFamilySSF466895.17E-6346IPR009057Homeodomain-like
PROSITE profilePS5129414.256100156IPR017930Myb domain
SuperFamilySSF466895.98E-16101157IPR009057Homeodomain-like
TIGRFAMsTIGR015573.2E-16104154IPR006447Myb domain, plants
SMARTSM007173.0E-8104154IPR001005SANT/Myb domain
PfamPF002495.2E-9107151IPR001005SANT/Myb domain
CDDcd001671.93E-9107152No hitNo description
Gene3DG3DSA:1.10.10.602.3E-9107150IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MAFEDALAVY GEECKDRWEK IAAIVPGKDA AEIKLHYELL VEDIECIEAG RIPLPFYVSS  60
GEGSADQAVD IHVTKNRSHS ANFHSGDVNP TEKGGSKAVQ ERRKGIAWTE EEHRLFLLGL  120
DKYGKSDWRS ISRNCVISRT PMQVASHAQK YFIRMNSANK DRRRSSIHDI TNVNDGDTST  180
PQGPITGQGN GSTGAVEKPA KSLSEPGLPR IAAYGPSVGQ PIAGPGGSAV GTTIMIPPGH  240
VPYVSRGPLP GPVVPGTPMN VVTVAYPVSQ PTIHQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A6e-152611877RADIALIS
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.84820.0somatic embryo| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young seedlings, developing leaves, sepals and trichomes. {ECO:0000269|PubMed:26243618}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011624612.11e-110transcription factor SRM1
SwissprotQ9FNN67e-88SRM1_ARATH; Transcription factor SRM1
TrEMBLA0A0D6R5A21e-136A0A0D6R5A2_ARACU; Uncharacterized protein
STRINGEMJ244541e-104(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.12e-83MYB family protein
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]