PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl005820
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MIKC_MADS
Protein Properties Length: 270aa    MW: 30870.3 Da    PI: 7.8374
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55345991PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-13803PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF87.48.1e-28958150
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
               k+ien++ rqvtf+kR+ng+lKKA+ELS LCdaeva++ifs++g+lye++
  Pgl005820  9 KKIENTTSRQVTFCKRKNGLLKKASELSLLCDAEVALLIFSNSGRLYEFA 58
               68***********************************************8 PP
2K-box79.49e-27841701298
      K-box  12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                ++ +++q+e +kLk++ + L  ++R+l+Ge+L+sLs+keL+q+e  L+k+++++RskKne+ l +ie+l+++e  l  en+ Lr+k+
  Pgl005820  84 TECNHWQKETRKLKQQRNILNDSIRQLMGECLDSLSMKELEQIEICLQKGISSVRSKKNEMQLGEIENLRRRECLLLAENRFLRSKV 170
                56789*******************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.931161IPR002100Transcription factor, MADS-box
SMARTSM004329.1E-39160IPR002100Transcription factor, MADS-box
CDDcd002652.55E-40275No hitNo description
SuperFamilySSF554551.2E-30277IPR002100Transcription factor, MADS-box
PRINTSPR004044.2E-29323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003194.5E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004044.2E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004044.2E-293859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129713.84386176IPR002487Transcription factor, K-box
PfamPF014862.2E-2287170IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MGRGKVQIKK IENTTSRQVT FCKRKNGLLK KASELSLLCD AEVALLIFSN SGRLYEFANN  60
SVKATIEKYI KTNEDNMQPA GDLTECNHWQ KETRKLKQQR NILNDSIRQL MGECLDSLSM  120
KELEQIEICL QKGISSVRSK KNEMQLGEIE NLRRRECLLL AENRFLRSKV VHTLSLLIFV  180
HAKRLKVLFY FLEEDYEGFS GKSDQLEASF SHLDMQNFLQ QNTVGEASSS HLDMQNFLQE  240
NTVGEAEQHS QTSSVVIQTA LQLGYVVLSI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A1e-18174174MEF2C
5f28_B1e-18174174MEF2C
5f28_C1e-18174174MEF2C
5f28_D1e-18174174MEF2C
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.236720.0stem
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed at early stage of flower development in stamen anlagen before stamen initiation, and at later stage in lodicule and ovule primordia initiation region. {ECO:0000269|PubMed:10945340, ECO:0000269|PubMed:16326928}.
UniprotTISSUE SPECIFICITY: Expressed in lemmas, paleas and lodicules. {ECO:0000269|PubMed:10945340}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the development of floral organs. Acts as C-class protein in association with MADS58. Involved in the control of lodicule number (whorl 2), stamen specification (whorl 3) and floral meristem determinacy (whorl 4), but not in the regulation of carpel morphogenesis. Plays a more predominant role in controlling lodicule development and in specifying stamen identity than MADS58. {ECO:0000269|PubMed:11828031, ECO:0000269|PubMed:16326928, ECO:0000269|PubMed:9869408}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ407042e-61MADS3_ORYSJ; MADS-box transcription factor 3
TrEMBLA0A0A7A5S01e-171A0A0A7A5S0_PICAB; MADS-box protein (Fragment)
STRINGXP_010683283.17e-62(Beta vulgaris)
STRINGXP_010272685.17e-62(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58780.16e-62MIKC_MADS family protein
Publications ? help Back to Top
  1. Kyozuka J,Shimamoto K
    Ectopic expression of OsMADS3, a rice ortholog of AGAMOUS, caused a homeotic transformation of lodicules to stamens in transgenic rice plants.
    Plant Cell Physiol., 2002. 43(1): p. 130-5
    [PMID:11828031]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]