PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl005830
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MYB
Protein Properties Length: 270aa    MW: 29210.6 Da    PI: 8.0017
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55335858PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-34853PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.71.2e-07852244
                     SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                     g W+ e  + +  a +++  +   +W++Ia+ ++ g+++ ++k ++
        Pgl005830  8 GDWSREQNKAFEMALAKHLEDtddRWEKIASAVP-GKSPAEVKRHY 52
                     68*****************99*************.**********9 PP
2Myb_DNA-binding39.11.7e-12121165347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+  ++ + +++G+g+W++I+r +   Rt+ q+ s+ qky
        Pgl005830 121 PWTEEEHRMFLLGLEKFGKGDWRSISRNFVISRTPTQVASHAQKY 165
                      7*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512937.97560IPR017884SANT domain
SMARTSM007172.5E-8658IPR001005SANT/Myb domain
SuperFamilySSF466899.33E-11863IPR009057Homeodomain-like
PfamPF002497.1E-6852IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.5E-5962IPR009057Homeodomain-like
CDDcd001675.66E-71052No hitNo description
PROSITE profilePS5129416.772113170IPR017930Myb domain
SuperFamilySSF466893.66E-17116171IPR009057Homeodomain-like
TIGRFAMsTIGR015577.3E-18118168IPR006447Myb domain, plants
SMARTSM007176.8E-11118168IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-11119164IPR009057Homeodomain-like
CDDcd001672.24E-10121166No hitNo description
PfamPF002496.7E-11121165IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MPANMSNGDW SREQNKAFEM ALAKHLEDTD DRWEKIASAV PGKSPAEVKR HYEILVEDIA  60
SIEAGRVPIP SYLDEVAEQA DDGTAKKGGT HSSAYANLPS ESNGTGKGTS KSDQERRKGI  120
PWTEEEHRMF LLGLEKFGKG DWRSISRNFV ISRTPTQVAS HAQKYFIRLN SMNRDRRRSS  180
IHDITSVNGS DVSSPQGPIT GQGNQSSGSA GQPANHVSQP GIPSVYGATV GQPIAGPMVS  240
AVGTPVMLPP GHAPYVVPVA YPMPQPTMHR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A5e-2110721173RADIALIS
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.104280.0vegetative bud
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young seedlings, developing leaves, sepals and trichomes. {ECO:0000269|PubMed:26243618}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010923684.11e-114transcription factor MYBS1
SwissprotQ9FNN67e-89SRM1_ARATH; Transcription factor SRM1
TrEMBLB8LKB70.0B8LKB7_PICSI; Uncharacterized protein
STRINGGSMUA_Achr9P21870_0011e-111(Musa acuminata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.14e-86MYB family protein
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]