PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pgl005872

Organism

Picea glauca

Taxonomic ID

3330

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

bZIP

Protein Properties

Length: 268aa MW: 29386 Da PI: 9.7495

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Pgl#S55343265	PU_unref	Unigene	View CDS
PUT-175a-Picea_glauca-7349268	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	50	6.4e-16	62	116	3	57
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 +lkr rr+ +NRe+ArrsR+RK+a + Le v++L eN +L k+l e+++++ Pgl005872 62 DLKRMRRMLSNRESARRSRRRKQAHLSDLEMQVAQLRVENASLFKRLTEMSQKYN 116 79******************************************88887777765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	3.8E-13	55	116	No hit	No description
SMART	SM00338	2.8E-17	60	124	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.427	62	116	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	3.9E-14	63	115	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	7.74E-12	64	115	No hit	No description
CDD	cd14702	1.22E-6	65	116	No hit	No description
PROSITE pattern	PS00036	0	67	82	IPR004827	Basic-leucine zipper domain
Pfam	PF12498	3.4E-20	131	244	IPR020983	Basic leucine-zipper, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 268 aa Download sequence Send to blast
YLHGALGHIV SQPIGIPALP PKPQSGASQI KTTTSGSSRE QTDDDELEAE IEANQSTMDP 60 SDLKRMRRML SNRESARRSR RRKQAHLSDL EMQVAQLRVE NASLFKRLTE MSQKYNDAAV 120 DNRILRADVE ALRAKVKMAE DMVARATGVG HSIQNTAQIS QASGMRYMGG PLESPVTSGL 180 QDSSRYSHSG QPISTQGMPC DISNMNDRNK ELLTQNVGTK MGRTPSMQRV ASLEHLQKRI 240 RGGVTCGSTP WSGGWDIEGS PRIENGGQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	76	83	RRSRRRKQ
2	78	83	SRRRKQ

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pgl.2595	0.0	somatic embryo

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the G-box-like motif (5'-ACGTGGC-3') of the chalcone synthase (CHS) gene promoter. G-box and G-box-like motifs are defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001236299.1	1e-67	G/HBF-1 protein
Refseq	XP_009787496.1	1e-67	PREDICTED: light-inducible protein CPRF2-like
Refseq	XP_016450151.1	1e-67	PREDICTED: light-inducible protein CPRF2-like
Swissprot	Q99090	2e-51	CPRF2_PETCR; Light-inducible protein CPRF2
TrEMBL	A9NUK0	0.0	A9NUK0_PICSI; Uncharacterized protein
STRING	XP_009787496.1	4e-67	(Nicotiana sylvestris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28770.2	8e-43	bZIP family protein

Publications ? help Back to Top
Weisshaar B,Armstrong GA,Block A,da Costa e Silva O,Hahlbrock K Light-inducible and constitutively expressed DNA-binding proteins recognizing a plant promoter element with functional relevance in light responsiveness. EMBO J., 1991. 10(7): p. 1777-86 [PMID:2050115]