PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pgl005883

Organism

Picea glauca

Taxonomic ID

3330

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

bHLH

Protein Properties

Length: 267aa MW: 30381.5 Da PI: 9.2609

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Pgl#S55332620	PU_unref	Unigene	View CDS
PUT-175a-Picea_glauca-24856	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	31	4.5e-10	166	214	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +Le ++Y++sLq Pgl005883 166 NSHSLAERVRREKISERMKVLQDLVPGC----NKVTGKALVLENIINYVQSLQ 214 58***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.44E-16	160	225	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.84E-9	161	218	No hit	No description
PROSITE profile	PS50888	15.294	163	213	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.5E-16	163	223	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.1E-7	166	214	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.4E-10	169	219	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 267 aa Download sequence Send to blast
XLYGSSVGER AVFPETKSIV SEEREDYDAN RLHEHTSGHA ENHYGMTDQN MCVDKPLTYR 60 GKGKGHTAPG NMNKRKTDQC ANDSFMETYV QVSAQKGPVK KSRGDRHKSS QSSSIYNDHE 120 QNSNPKSDVI RGESSELLTN SVKDEPKNKS QKDYIHLRSR RGQATNSHSL AERVRREKIS 180 ERMKVLQDLV PGCNKVTGKA LVLENIINYV QSLQNQVEIL SVKLTSVLSR CHFDLQINGQ 240 PSKEHWSNVR ETEDFHGSLM HYKQHKQ

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269\|PubMed:12679534}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Swissprot	Q9SRT2	2e-39	BH062_ARATH; Transcription factor bHLH62
TrEMBL	D5AB25	1e-157	D5AB25_PICSI; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G59640.1	1e-42	BIG PETAL P

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]