PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pgl005894

Organism

Picea glauca

Taxonomic ID

3330

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

WRKY

Protein Properties

Length: 266aa MW: 29013.1 Da PI: 4.9058

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-175a-Picea_glauca-11192	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	96.1	2.4e-30	51	109	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers +dp++v++tY+++Hnh+ Pgl005894 51 SDMWAWRKYGQKPIKGSPYPRGYYRCSSSkGCCARKQVERSCTDPSMVIVTYTSDHNHP 109 69***********************998**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	6.1E-31	45	111	IPR003657	WRKY domain
SuperFamily	SSF118290	7.45E-26	48	111	IPR003657	WRKY domain
SMART	SM00774	1.1E-34	50	110	IPR003657	WRKY domain
PROSITE profile	PS50811	32.019	51	111	IPR003657	WRKY domain
Pfam	PF03106	3.9E-25	52	109	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 266 aa Download sequence Send to blast
VKRDSPERST GEDCDVKAAP CSKRRKTVEK KVVCVPVGPA DGRQKNDGPP SDMWAWRKYG 60 QKPIKGSPYP RGYYRCSSSK GCCARKQVER SCTDPSMVIV TYTSDHNHPW PANRANSNSN 120 SSLPAKQSQL EAAPILSEKS SNISQEVAST PEEAAACINS SDNLFSLIIN SPGRLEQRVI 180 SSLEIQPDEP LAFVQDVAEL CISGSNNLED DDFYADLGEL PDSSAIFSTR GSFFEDDESR 240 NSGGIDRFNF FSWSGSCGLL GNNAVI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	9e-21	30	112	6	80	Disease resistance protein RRS1
5w3x_D	9e-21	30	112	6	80	Disease resistance protein RRS1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pgl.15018	1e-126	root

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0D6R4G3	1e-109	A0A0D6R4G3_ARACU; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G29280.1	4e-48	WRKY DNA-binding protein 65