PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl005920
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family ZF-HD
Protein Properties Length: 265aa    MW: 29505.7 Da    PI: 8.0778
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55337365PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-23826PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer105.33.8e-3368124259
  ZF-HD_dimer   2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 
                  ++vrY+eC+kNhAas+Ggha+DGCgEfmp  g+egt +alkCaAC+CHRnFHRreve 
    Pgl005920  68 KSVRYRECMKNHAASIGGHAIDGCGEFMPC-GDEGTLEALKCAACNCHRNFHRREVEG 124
                  679**************************9.999*********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257741.0E-2267128IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047706.9E-3070122IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.4E-2971122IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.66472121IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466892.42E-19193263IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.7E-31196264IPR009057Homeodomain-like
TIGRFAMsTIGR015655.6E-26202258IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
RCFTEVQDLE DSEGKLMELG GQEEEIGMPI SVSYGPIHES SKLKILTPGG NGAASDEQQQ  60
QQQAAAKKSV RYRECMKNHA ASIGGHAIDG CGEFMPCGDE GTLEALKCAA CNCHRNFHRR  120
EVEGEPPCYY CYNPRKDSRK RPAGSPLPLA LPSTSPPGVI ARPSPQMIMA FGSGPTHEND  180
QQEHDMALHG LHGASMAMPI MKKRFRTKFT QDQKDKMCSF AEKLGWRIQK HDEAAVQQFC  240
MELGVKRHVL KVWMHNNKHT LGKKM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A2e-262032601875ZF-HD homeobox family protein
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.210220.0cone| somatic embryo| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mostly expressed in flowers and inflorescence. {ECO:0000269|PubMed:16428600}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024393207.16e-79zinc-finger homeodomain protein 2-like
RefseqXP_024393215.16e-79zinc-finger homeodomain protein 2-like
RefseqXP_024393224.16e-79zinc-finger homeodomain protein 2-like
SwissprotO647222e-61ZHD3_ARATH; Zinc-finger homeodomain protein 3
TrEMBLD5ADH80.0D5ADH8_PICSI; Uncharacterized protein
STRINGPP1S230_85V6.12e-78(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02540.13e-63homeobox protein 21
Publications ? help Back to Top
  1. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]
  2. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]