PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl006119
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family bHLH
Protein Properties Length: 256aa    MW: 28759.7 Da    PI: 7.4205
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55345388PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-41950PU_refplantGDBView CDS
PUT-175a-Picea_glauca-7066PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.47.2e-1066109755
                HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                  Er+RR+++N+ + +Lr+++Pk +      K++K +i   A+ Y+ +Lq
  Pgl006119  66 HTERKRRKKLNDTLYTLRSVVPKiS------KMDKQSIIGDAISYVLDLQ 109
                57*********************66......*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.36759108IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-1464124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-965114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-766109IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.27E-966113No hitNo description
Gene3DG3DSA:4.10.280.106.2E-1367122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MDTRLQYAGE IFKSDYYEDQ NNKLWLDNMD EIAGQLDWDD SDPEIIGGSK PATKTNYLQA  60
ASKNLHTERK RRKKLNDTLY TLRSVVPKIS KMDKQSIIGD AISYVLDLQK TIREIEGEIE  120
GLCSSNKGDH TQRTPQTMNP LTNANCALGK RSIESGDKKK SVDKLKHGKV LQVEICNAGE  180
GGIYHVRIEG KKETGGLVKL TRALESLPLQ IMNSNICCFD EAIHYSLTVN VKSLGNVGTD  240
KLEDMIRKTT TRDCFE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16774ERKRRKKL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.127680.0needle| root| stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB8LRN60.0B8LRN6_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.22e-25bHLH family protein