PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pgl006153

Organism

Picea glauca

Taxonomic ID

3330

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

MYB_related

Protein Properties

Length: 255aa MW: 30363.5 Da PI: 7.557

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Pgl#S55349526	PU_unref	Unigene	View CDS
PUT-175a-Picea_glauca-8463	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	42.6	1.4e-13	61	101	4	47
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 WT++E l+ +++++G++ Wk+I++ +g ++++++k++w++ Pgl006153 61 WTEDEINALKSLHAEHGNN-WKKISEFLG--KSRYHVKDKWRSI 101 ***************99.****8..9*******975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.925	54	106	IPR017930	Myb domain
SMART	SM00717	8.1E-10	57	104	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	2.3E-11	59	119	IPR009057	Homeodomain-like
CDD	cd00167	2.59E-6	61	102	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.4E-10	61	112	IPR009057	Homeodomain-like
Pfam	PF13921	9.9E-12	61	119	No hit	No description
PROSITE profile	PS50090	7.503	103	172	IPR017877	Myb-like domain
SMART	SM00717	0.0049	107	174	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	4.7E-8	113	177	IPR009057	Homeodomain-like
SuperFamily	SSF46689	5.5E-8	152	230	IPR009057	Homeodomain-like
PROSITE profile	PS50090	6.597	174	227	IPR017877	Myb-like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence Send to blast
FYIKERGYDE EKGLEMILNC MKNSEVRNCW KQIAASLPSR PLMSVYFRAH VLYERSEERG 60 WTEDEINALK SLHAEHGNNW KKISEFLGKS RYHVKDKWRS IKRTGLNSGH WSREEYQKLF 120 DLVNQNLQLK SFEKEEKHTR NVLRDNINWE AIADRMETRN HVYCCKKWYY SLASSMVQTG 180 EWENADDITL LRSLLETEAS DEEAVDWNAL VEGRSDVTCL KRWRQMVKHL GECHSKPFLE 240 KLEILVKRYI PGLIE

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pgl.6922	0.0	needle\| root\| vegetative bud

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020262190.1	2e-87	cyclin-D-binding Myb-like transcription factor 1
TrEMBL	A0A2P2JN05	2e-87	A0A2P2JN05_RHIMU; Myb family transcription factor family protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G41020.1	1e-76	MYB_related family protein