PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl006256
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family C3H
Protein Properties Length: 249aa    MW: 28516.4 Da    PI: 4.5891
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55333289PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-15283PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.14.7e-06221242426
                ---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                 +C+f+++   C++G++C+ +Hg
  Pgl006256 221 QICKFYLQ-QRCRFGSNCRMSHG 242
                68******.**********8887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.774217244IPR000571Zinc finger, CCCH-type
SMARTSM003565.1E-6217243IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.43E-5218242IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
XVTVTTCMEF WCQNECKDYI NISARGPLER ILLGFISVPS IHLPPFCSEI WTRKGDGFLT  60
EAKLGLFFLS VNMAEEEEYD LEQQLECQLV EHRDSVTGVD EALAGDPENA ELLMVREELA  120
SAIKAAEEGL LHLKRSRLLR EVDSMEDLRT TPKLETADAG VKPLELTNVE PEPLEMVPFA  180
VGSKCRFRHI DGRWYNGQVI EMEYDKLARV SFLTPTSENM QICKFYLQQR CRFGSNCRMS  240
HGMCPCYWQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021689474.12e-65zinc finger CCCH domain-containing protein 18
SwissprotQ6K6879e-63C3H18_ORYSJ; Zinc finger CCCH domain-containing protein 18
TrEMBLD5ADI71e-154D5ADI7_PICSI; Uncharacterized protein
STRINGcassava4.1_006222m2e-64(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24830.11e-52C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]