PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl006280
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family ZF-HD
Protein Properties Length: 249aa    MW: 27851.7 Da    PI: 8.2226
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55333814PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-7162PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer104.47.2e-3351107259
  ZF-HD_dimer   2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 
                  ++vrY+eC+kNhAa++Gg a+DGCgEfmps geegt +alkC+AC+CHRnFHRreve 
    Pgl006280  51 KTVRYRECMKNHAAAMGGSATDGCGEFMPS-GEEGTLEALKCSACECHRNFHRREVEG 107
                  689**************************9.999*********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257743.0E-2353108IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047701.6E-2953105IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015666.7E-3054105IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.29555104IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.601.6E-31184247IPR009057Homeodomain-like
SuperFamilySSF466892.39E-19184246IPR009057Homeodomain-like
TIGRFAMsTIGR015652.1E-27185242IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MDLGGQDGAE IPMPMPMSTG SFIHESSTNL LINNVNAGPL HIEEEQIKSK KTVRYRECMK  60
NHAAAMGGSA TDGCGEFMPS GEEGTLEALK CSACECHRNF HRREVEGEPS CDCFRIRDQL  120
NRKRSGVLVS SRAQGAAAIA PDPFAFPPNN LLPRLPPQAI MSYSTGPSES DELEGTFLSR  180
PAILKKRFRT KFTQEQKDRM LDFAEKVGWR IQKHDEQAVQ QFCQDIGVKR RVLKVWMHNN  240
KNTLGKKSD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A3e-261862431875ZF-HD homeobox family protein
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.157840.0cone| somatic embryo| stem
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Not detected in the meristem prior to exposure to long days (LDs), but after exposure to three LDs, stable accumulation on the flanks of the meristem adjacent to floral primordia, during floral induction. {ECO:0000269|PubMed:22319055}.
UniprotTISSUE SPECIFICITY: Mostly expressed in flowers and inflorescence. {ECO:0000269|PubMed:16428600}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. Probably involved in the regulation of floral induction. {ECO:0000269|PubMed:22319055}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by exposure to long days. {ECO:0000269|PubMed:22319055}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010252306.11e-85PREDICTED: zinc-finger homeodomain protein 4
SwissprotQ9M9S02e-61ZHD4_ARATH; Zinc-finger homeodomain protein 4
TrEMBLA9NQC40.0A9NQC4_PICSI; Uncharacterized protein
STRINGXP_010252306.15e-85(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14440.26e-61homeobox protein 31