PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl006288
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family Trihelix
Protein Properties Length: 248aa    MW: 28415.9 Da    PI: 6.9343
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S29740671PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-18173PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix106.12.5e-3340125187
   trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                rW+k evl+Li++r+ +e+r+ +   k plWee+s +m++ g++rs+k+Ckekwen+nk+++k ke++kkr +e+ +tcpyf+ql+a
  Pgl006288  40 RWPKPEVLTLIKLRSGLEQRFHEPGPKSPLWEEISTAMASLGYNRSAKRCKEKWENINKYFRKAKESNKKR-PENAKTCPYFHQLDA 125
                8*********************************************************************8.99999********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.0973397IPR017877Myb-like domain
SMARTSM007170.00123799IPR001005SANT/Myb domain
CDDcd122031.39E-2939104No hitNo description
PfamPF138372.2E-2339126No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
XNNLNNPNNL NNPNADEDHQ VVVHHEDIKD LSSFDPNSKR WPKPEVLTLI KLRSGLEQRF  60
HEPGPKSPLW EEISTAMASL GYNRSAKRCK EKWENINKYF RKAKESNKKR PENAKTCPYF  120
HQLDALYKKR NLANRQNKIM EKDSMVNGND QKVEDQETEE LVEHEQPSGS NRENTHAHHS  180
HNQQGDHGAD ILAVMPSAQG EPHAYNHERT NPNSSSTTRD ASSFMAMVHK LTSDHPPEFN  240
MSTSSNTE
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.52200.0cone| root| stem
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024402443.13e-55trihelix transcription factor GTL1-like
SwissprotQ391175e-42TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLA0A176VWE53e-55A0A176VWE5_MARPO; Uncharacterized protein
TrEMBLA0A2R6W4G12e-55A0A2R6W4G1_MARPO; Uncharacterized protein
STRINGPP1S19_341V6.11e-54(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.13e-45Trihelix family protein