PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl006502
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family GRAS
Protein Properties Length: 237aa    MW: 27061.1 Da    PI: 7.5508
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55337699PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-2082PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS57.72.4e-1827447122
       GRAS  47 eALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqG 122
                e+L arl    ++ly++l+ +et+   + + l+a++l+++v+P+++f++++a ++Ilea+++ee+vHiiDf+i+ G
  Pgl006502   2 EGLVARLGPLAQSLYNTLKWKETP---TRDILSATRLLYNVCPYIEFGYVAAISTILEALKEEEKVHIIDFEIGGG 74 
                8999*****9************99...899*******************************************987 PP
2GRAS172.24e-5379228223373
       GRAS 223 erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleea 322
                + d++L++vk+l+Pkvv++ve+e+++n+++Fl rf+eal+yy a+f+sl+ +l re+++ri++E+++l+r+ivn+vacegaer+er e ++kWr+r+++a
  Pgl006502  79 HLDQLLRMVKGLNPKVVTIVEREMNTNTAPFLPRFMEALNYYLAVFESLDISLQRENRDRINIEKQCLARDIVNIVACEGAERIERYEVAGKWRARMTMA 178
                5899************************************************************************************************ PP

       GRAS 323 GFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                GF+ +p++++++++++ l +  +++ y+++ e+g+l +gW d+ Lv+vSaW
  Pgl006502 179 GFTIYPINTTVENSVRPLFESRGNN-YSLKAEKGALHFGWLDKVLVVVSAW 228
                ***********************66.************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098524.5391210IPR005202Transcription factor GRAS
PfamPF035148.4E-16274IPR005202Transcription factor GRAS
PfamPF035141.4E-5079228IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
XEGLVARLGP LAQSLYNTLK WKETPTRDIL SATRLLYNVC PYIEFGYVAA ISTILEALKE  60
EEKVHIIDFE IGGGKPIHHL DQLLRMVKGL NPKVVTIVER EMNTNTAPFL PRFMEALNYY  120
LAVFESLDIS LQRENRDRIN IEKQCLARDI VNIVACEGAE RIERYEVAGK WRARMTMAGF  180
TIYPINTTVE NSVRPLFESR GNNYSLKAEK GALHFGWLDK VLVVVSAWNL ESHSMIK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-1982228224374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.6640.0needle| root| somatic embryo| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, shoots, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010649367.11e-70PREDICTED: scarecrow-like protein 1
RefseqXP_019075083.11e-70PREDICTED: scarecrow-like protein 1
RefseqXP_019075084.11e-70PREDICTED: scarecrow-like protein 1
RefseqXP_019075085.11e-70PREDICTED: scarecrow-like protein 1
SwissprotQ9SDQ34e-62SCL1_ARATH; Scarecrow-like protein 1
TrEMBLA0A0D2PPV16e-79A0A0D2PPV1_GOSRA; Uncharacterized protein
STRINGGSMUA_AchrUn_randomP18920_0019e-77(Musa acuminata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21450.12e-64SCARECROW-like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]