PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl006505
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family NF-YA
Protein Properties Length: 237aa    MW: 26453.6 Da    PI: 10.3031
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55334730PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-26490PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA104.21.1e-3254110158
  CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                +ep+YVNaKQy++Il+RRq Rak+e+ekk+ +k rkpylheSRh hA+rR+Rg+gGrF
  Pgl006505  54 EEPVYVNAKQYHGILRRRQLRAKAESEKKV-IKVRKPYLHESRHLHAMRRARGCGGRF 110
                69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.2E-3752113IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115238.18453113IPR001289Nuclear transcription factor Y subunit A
PfamPF020454.6E-2855110IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006166.0E-245678IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS0068605878IPR018362CCAAT-binding factor, conserved site
PRINTSPR006166.0E-2487110IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
NQQELDHSIV RAAYPYSDPY VGSIFAAYGA QAMIHPHMLG VQQARMPLRI ETEEEPVYVN  60
AKQYHGILRR RQLRAKAESE KKVIKVRKPY LHESRHLHAM RRARGCGGRF LNTKKLEQSK  120
VNTGNGRGLE GPPGQTGSSS GSEGFQSRDG NLRILQEVQG TTSRMSSSKV SSLEKSYTDE  180
KSYLYSRNNG VYHSGRLQQH FHMSAFHHLS SGSDKGESGD ARGLVSNGSQ QRAVEIL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A1e-2054114262NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.171670.0stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006838331.13e-68nuclear transcription factor Y subunit A-1
TrEMBLA0A023R6U31e-156A0A023R6U3_9SPER; NFYA4
STRINGERN009001e-67(Amborella trichopoda)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30500.26e-44nuclear factor Y, subunit A7