PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl006542
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MIKC_MADS
Protein Properties Length: 236aa    MW: 27085.6 Da    PI: 7.1478
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55336347PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-44802PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF82.72.3e-261059251
               ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
     SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
               r  n+s rqvtfskRr g++KKA ELS+LC+a+va+++fsstgkly+yss
  Pgl006542 10 RRANTSTRQVTFSKRRRGLFKKARELSILCEADVALVVFSSTGKLYDYSS 59
               56799*******************************************96 PP
2K-box65.71.6e-228117110100
      K-box  10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                + ++ e  +++l+++k++ e   r++R++ G++Le Lslk+LqqLe++Le +l++iRs+K e+ +++i+elq+k  ++ een++Lr +l+e
  Pgl006542  81 QPTTLEFKSKDLKRIKQQFEDTSRNLRKMHGKELEGLSLKDLQQLEEELEMGLTSIRSQKVEHHVKEIKELQQKGIQMIEENTKLRGQLNE 171
                5566788999****************************************************************************99865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006628.959161IPR002100Transcription factor, MADS-box
SMARTSM004322.1E-36160IPR002100Transcription factor, MADS-box
CDDcd002654.57E-35269No hitNo description
SuperFamilySSF554551.44E-29386IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-25323IPR002100Transcription factor, MADS-box
PfamPF003191.0E-231357IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-252338IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-253859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129712.80685175IPR002487Transcription factor, K-box
PfamPF014869.4E-1986169IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MAREKIEIKR RANTSTRQVT FSKRRRGLFK KARELSILCE ADVALVVFSS TGKLYDYSSS  60
SMKVILDKYI LYHSTIQNDG QPTTLEFKSK DLKRIKQQFE DTSRNLRKMH GKELEGLSLK  120
DLQQLEEELE MGLTSIRSQK VEHHVKEIKE LQQKGIQMIE ENTKLRGQLN EGYGSLVENN  180
DGCESLFIEP LENQDPQSSE SINTYAFNFK LHNSPVKDPE DSVTSLQLGL SSHSEL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A5e-19173173MEF2C
5f28_B5e-19173173MEF2C
5f28_C5e-19173173MEF2C
5f28_D5e-19173173MEF2C
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1825KRRANTSTRQVTFSKRRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.55380.0needle| root| stem| vegetative bud
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA9NM371e-165A9NM37_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.15e-53MIKC_MADS family protein