PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl006566
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family ERF
Protein Properties Length: 235aa    MW: 26274.9 Da    PI: 9.7138
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-175a-Picea_glauca-39828PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.77.9e-2062112256
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                 y+GVr+ + +g+WvAeIr p++   r r +lg+f+tae+Aa a+++a+ +l+ge
  Pgl006566  62 LYRGVRQSH-WGKWVAEIRLPRN---RSRLWLGTFDTAEQAALAYDRAAYRLRGE 112
                59****988.**********955...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.02E-3161119No hitNo description
Gene3DG3DSA:3.30.730.101.2E-3062119IPR001471AP2/ERF domain
SMARTSM003801.9E-3462125IPR001471AP2/ERF domain
PROSITE profilePS5103222.58962119IPR001471AP2/ERF domain
SuperFamilySSF541712.75E-2262119IPR016177DNA-binding domain
PfamPF008479.1E-1463112IPR001471AP2/ERF domain
PRINTSPR003673.2E-106374IPR001471AP2/ERF domain
PRINTSPR003673.2E-1085101IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
LQLLQRQGEI EKLQWLTSVV SAPKPKFGHK RDATNSLGLR PWPMKHACKQ GLRLCSNQPT  60
KLYRGVRQSH WGKWVAEIRL PRNRSRLWLG TFDTAEQAAL AYDRAAYRLR GEYARLNFPG  120
LKQQQQLSHV DAKLQAICER SSASTKPSHE GKLGHNSLNQ KISEVTPCKE KSPFEVKSEC  180
PEFSGGDNNP VFAAQNSDSA LPCKSMTDAV CNMPSISASA SALATTWTDV EEWIL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-2061119160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A2e-2061119463ATERF1
3gcc_A2e-2061119463ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.224000.0cone
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016433104.11e-44PREDICTED: ethylene-responsive transcription factor RAP2-13-like
TrEMBLJ7H6882e-45J7H688_PINTB; Transcription factor 2
STRINGevm.model.supercontig_996.11e-43(Carica papaya)
STRINGXP_009616719.18e-44(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22190.16e-33ERF family protein