PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl006590
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MIKC_MADS
Protein Properties Length: 234aa    MW: 26914.3 Da    PI: 6.1769
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55346738PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-24823PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF86.51.5e-27959151
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
               kri n s rqvtfskRr g++KKA+ELS+LC+a+va+++fsstgkly+yss
  Pgl006590  9 KRIANASARQVTFSKRRRGLFKKAQELSILCEADVALVVFSSTGKLYDYSS 59
               79***********************************************96 PP
2K-box752e-25791709100
      K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                  + + e  +++l+++k++ie + +++R++ Ge+Le+Lslk+LqqLe+qLe +l+k+Rs+K e +l++i+elq+k  ++ een +Lr++++e
  Pgl006590  79 DGQPNLEIESHDLKRIKQQIEDISQTLRNIHGEELEKLSLKDLQQLEEQLEAGLSKVRSQKGENILKEINELQQKGIRIIEENSKLRREIKE 170
                55667788899******************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004327.8E-38160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006629.815161IPR002100Transcription factor, MADS-box
CDDcd002656.01E-36269No hitNo description
SuperFamilySSF554553.4E-31385IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-26323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003193.6E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-263859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129714.3384174IPR002487Transcription factor, K-box
PfamPF014863.7E-2087168IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MAREKIEIKR IANASARQVT FSKRRRGLFK KAQELSILCE ADVALVVFSS TGKLYDYSSS  60
SMKMMLDKYI LYPSSNRKDG QPNLEIESHD LKRIKQQIED ISQTLRNIHG EELEKLSLKD  120
LQQLEEQLEA GLSKVRSQKG ENILKEINEL QQKGIRIIEE NSKLRREIKE AERGHVENND  180
TEESFFIEPS ENQDPQSSES ITNAFTFKLH KSAIKDYEDS DTSLQLGLSS QSKF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A4e-20179181MEF2C
5f28_B4e-20179181MEF2C
5f28_C4e-20179181MEF2C
5f28_D4e-20179181MEF2C
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.64600.0root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Widely expressed with highest levels in shoot tips and axillary buds. Also found in fully developed pedicels and flowers.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor that coordinates gene expression underlying the differentiation of the pedicel abscission zone. May also be involved in the maintenance of the inflorescence meristem state.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027075278.16e-71MADS-box protein SVP-like
SwissprotQ9FUY62e-66JOIN_SOLLC; MADS-box protein JOINTLESS
TrEMBLB8LNJ61e-167B8LNJ6_PICSI; Uncharacterized protein
STRINGVIT_00s0313g00070.t011e-69(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.11e-55MIKC_MADS family protein
Publications ? help Back to Top
  1. Nakano T,Kato H,Shima Y,Ito Y
    Apple SVP Family MADS-Box Proteins and the Tomato Pedicel Abscission Zone Regulator JOINTLESS have Similar Molecular Activities.
    Plant Cell Physiol., 2015. 56(6): p. 1097-106
    [PMID:25746985]