PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl006620
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MIKC_MADS
Protein Properties Length: 233aa    MW: 26816.4 Da    PI: 6.5145
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55343988PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-2752PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF80.89.3e-26959151
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
               k+i n ++rq tfskRrng++KKA+ELSvLCda+v +i++ + gkl+e+ss
  Pgl006620  9 KKIMNATRRQATFSKRRNGLFKKANELSVLCDADVGLIVYNTAGKLFEFSS 59
               6899*********************************************96 PP
2K-box41.65.3e-159517814100
      K-box  14 aeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                a   + e++kLk+ i+nL r      G+++e +slk  + Leq Le ++k + s++ e++++q++ lq++e+++ +e  +Lr+++ee
  Pgl006620  95 ACDDEMEVEKLKEDINNLSRF---CRGDEVEGISLKMFEDLEQTLEMAVKCVQSRQREIFTKQVNILQNQEDKALKERGELRNQIEE 178
                556688************987...88**********************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006628.427161IPR002100Transcription factor, MADS-box
SMARTSM004321.7E-35160IPR002100Transcription factor, MADS-box
CDDcd002652.19E-34273No hitNo description
SuperFamilySSF554559.03E-29277IPR002100Transcription factor, MADS-box
PRINTSPR004043.1E-24323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003196.3E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004043.1E-242338IPR002100Transcription factor, MADS-box
PRINTSPR004043.1E-243859IPR002100Transcription factor, MADS-box
PROSITE profilePS512978.87388182IPR002487Transcription factor, K-box
PfamPF014865.2E-1199176IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MGRVKREIKK IMNATRRQAT FSKRRNGLFK KANELSVLCD ADVGLIVYNT AGKLFEFSSS  60
SSMKMLINKY LKHRDCGESN FSCGGESNFS CQMHACDDEM EVEKLKEDIN NLSRFCRGDE  120
VEGISLKMFE DLEQTLEMAV KCVQSRQREI FTKQVNILQN QEDKALKERG ELRNQIEEIY  180
RHTTPTRYCA LVDIQGEYGE NLNSEGTSSS KNIHSKYGNE VLDDFETFLT LRL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A2e-17179178MEF2 CHIMERA
6byy_B2e-17179178MEF2 CHIMERA
6byy_C2e-17179178MEF2 CHIMERA
6byy_D2e-17179178MEF2 CHIMERA
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K0M7B01e-127A0A0K0M7B0_PINTB; MADS3 (Fragment)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26310.13e-36MIKC_MADS family protein