PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pgl006686

Organism

Picea glauca

Taxonomic ID

3330

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

bHLH

Protein Properties

Length: 230aa MW: 25751 Da PI: 9.6141

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Pgl#S55339726	PU_unref	Unigene	View CDS
PUT-175a-Picea_glauca-5743	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	43.3	6.7e-14	40	86	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h e+Er+RR+++N++f Lr ++P+ K++Ka+ L Av YI++Lq Pgl006686 40 NHVEAERQRREKLNQRFYALRAVVPNV-----SKMDKASLLGDAVSYINELQ 86 799*********************6.....5****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	17.301	36	85	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.27E-20	39	107	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	7.22E-13	39	90	No hit	No description
Gene3D	G3DSA:4.10.280.10	2.0E-17	39	85	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.1E-11	40	86	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.5E-17	42	91	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:1.20.5.170	4.7E-4	86	110	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 230 aa Download sequence Send to blast
XSDHSDVEAA SFKEANQAVI EKKPRKRGRK PANGREEPLN HVEAERQRRE KLNQRFYALR 60 AVVPNVSKMD KASLLGDAVS YINELQSRVQ DIESEKKELQ AQIEATKKES SSSHSAFSGT 120 NLGFIKDQSG SSQKPDVKRF GTKECSALDL EVRILGPDAM IRIQSAKKNH PAARLMTSLQ 180 DLELEVHHAS VSTVDELMLQ NVIVKLPSSL YTEEQLNAIL LKKLSDPKFK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5gnj_A	1e-35	34	109	2	77	Transcription factor MYC2
5gnj_B	1e-35	34	109	2	77	Transcription factor MYC2
5gnj_E	1e-35	34	109	2	77	Transcription factor MYC2
5gnj_F	1e-35	34	109	2	77	Transcription factor MYC2
5gnj_G	1e-35	34	109	2	77	Transcription factor MYC2
5gnj_I	1e-35	34	109	2	77	Transcription factor MYC2
5gnj_M	1e-35	34	109	2	77	Transcription factor MYC2
5gnj_N	1e-35	34	109	2	77	Transcription factor MYC2
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	21	29	KKPRKRGRK

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pgl.20699	0.0	somatic embryo

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Highly expressed in trichomes and at lower levels in leaves and flowers (PubMed:24884371). Expressed at low levels in roots, stems, leaves, flowers and fruits (PubMed:15231736). {ECO:0000269\|PubMed:15231736, ECO:0000269\|PubMed:24884371}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds to the G-box motif (5'-AACGTG-3') found in a number of promoters of jasmonate-induced genes (PubMed:15231736). Transcription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371, PubMed:30518626). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371). Acts synergistically with EOT1 in the transactivation of TPS5 (PubMed:24884371). Involved in type VI glandular trichome development (PubMed:30518626). Involved in the activation of terpene synthases required for volatile mono- and sesquiterpenes synthesis by the glandular cells of type VI trichomes (PubMed:30518626). {ECO:0000269\|PubMed:15231736, ECO:0000269\|PubMed:24884371, ECO:0000269\|PubMed:30518626}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by methyl jasmonate and wounding. {ECO:0000269\|PubMed:15231736}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016670616.1	1e-84	PREDICTED: transcription factor MYC4-like
Swissprot	A0A060KY90	5e-81	MYC1_SOLLC; Transcription factor MYC1
TrEMBL	V9NEK8	1e-131	V9NEK8_TAXCU; JAMYC2
STRING	Gorai.006G216700.1	1e-83	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32640.1	8e-82	bHLH family protein

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Spyropoulou EA,Haring MA,Schuurink RC RNA sequencing on Solanum lycopersicum trichomes identifies transcription factors that activate terpene synthase promoters. BMC Genomics, 2014. 15: p. 402 [PMID:24884371] Xu J, et al. SlMYC1 Regulates Type VI Glandular Trichome Formation and Terpene Biosynthesis in Tomato Glandular Cells. Plant Cell, 2018. 30(12): p. 2988-3005 [PMID:30518626]